Hg_chrom6_TN10mRNA_12507
Organism: Heterodera glycines Gene Locus: chr6:6961055-6973474 Feature type: polypeptideProtein Sequence
Length: 2,636
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 0.988 | 0.973 | 0.994 | 1.005 | 1.77 | 0.849 | 1.214 | 0.885 | 0.974 | 0.753 | 1.718 | 0.854 | 1.072 | 1.262 | 1.209 | 1.045 | 0.874 | 0.554 | 0.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11782
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,KKKKR,PMCKRRV,TRGRKRKKP,RRTESTRGGRGKGRKP,KKSRGNASKGGNRGRRP,RKNRANCPTTRRRGRRT,KKALQVQQRLVDKQRQRLK
|
22-50
|
0.982
|
4-54
|
1.000
|
— | — |
0.000
|
— | — |
0.949
|
0.055
|
0.054
|
0.262
|
0.041
|
0.011
|
0.013
|
0.009
|
0.048
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004426
|
2.000
|
1.000
|
Hsc_gene_6169.t1
|
Hsc_gene_24247.t1;Hsc_gene_24255.t1;Hsc_gene_6168.t1;Hsc_gene_6169.t1
|
— |
Q8NEZ4.3 Histone-lysine N-methyltransferase 2C [Homo sapiens]
|
KAI1731709.1 PHD-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634
|
GO:0008150_0.919|GO:0005575_0.877|GO:0110165_0.874|GO:0009987_0.864|GO:0005622_0.801|GO:0003674_0.765|GO:0016020_0.747|GO:0043226_0.726|GO:0043229_0.709|GO:0071840_0.697|GO:0016043_0.695|GO:0065007_0.692|GO:0050789_0.678|GO:0043227_0.654|GO:0050794_0.644|GO:0005634_0.639|GO:0043231_0.639|GO:0032502_0.588|GO:0003824_0.579|GO:0048856_0.560|GO:0032501_0.553|GO:0005488_0.552|GO:0008152_0.533|GO:0019222_0.533|GO:0031323_0.533|GO:0044237_0.533|GO:0140096_0.533|GO:0043170_0.532|GO:0060255_0.527|GO:0048518_0.517|GO:0031974_0.514|GO:0031981_0.514|GO:0043233_0.514|GO:0070013_0.514|GO:0048522_0.513|GO:0006325_0.511|GO:0006338_0.511|GO:0016740_0.511|GO:0009058_0.510|GO:0009059_0.510|GO:0010467_0.510|GO:0044249_0.510|GO:0007275_0.508
|
IPR001214+2496-2612_2496-2618_2507-2612+|IPR001965+66-114_413-464_465-511_541-592_2130-2179+|IPR003616+2620-2636+|IPR003888+2216-2276_2217-2276_2232-2275+|IPR003889+2277-2374_2281-2380_2308-2375+|IPR011011+405-465_456-518_535-594+|IPR013083+409-463_464-514_538-595_2064-2180+|IPR019787+411-466_463-513_466-510_530-594+|IPR034732+2068-2179+|IPR036910+955-1040+|IPR046341+2480-2636_2483-2636+
|
SM00249+66-114_413-464_465-511_541-592_2130-2179+|SM00317+2496-2618+|SM00508+2620-2636+|SM00541+2232-2275+|SM00542+2281-2380+
|
PF00628+466-510+PHD-finger|PF00856+2507-2612+SET_domain|PF05964+2217-2276+F/Y-rich_N-terminus|PF05965+2308-2375+F/Y_rich_C-terminus
|
G3DSA:3.30.40.10:FF:000002+2065-2181+Histone-lysine_N-methyltransferase
|
PTHR45888+1838-2636+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-391;705-760;842-1676;1763-1871
|
5.000
|
1-191;392-704;761-841;1677-1762;1872-2636
|
6kiw_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
290099.800
|
7.227
|
26.000
|
24.962
|
8.118
|
50.948
|
49.052
|
13.581
|
11.381
|
53.680
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1806.118
|
3737.188
|
1676.396
|
1630.567
|
1722.134
|
1644.251
|
2147.160
|
1255.735
|
2362.612
|
949.770
|
1555.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.387
|
-1.334
|
— | — | — |
0.395
|
-0.495
|
0.917
|
— | — | — | — | — |
No JSON data available for plots.