Hg_chrom6_TN10mRNA_12510
Organism: Heterodera glycines Gene Locus: chr6:6980970-6982288 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.936 | 0.488 | 1.62 | 1.566 | 0.86 | 0.719 | 1.678 | 0.746 | 1.088 | 1.017 | 1.974 | 0.932 | 0.903 | 0.685 | 1.246 | 1.76 | 0.814 | 1.033 | 0.197 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11785
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.426
|
0.164
|
0.008
|
0.221
|
0.336
|
0.552
|
0.491
|
0.021
|
0.670
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010770
|
1.000
|
1.000
|
Hsc_gene_6164.t1
|
Hsc_gene_6164.t1
|
— |
Q5BJT2.1 Ubiquitin-like protein 3 [Rattus norvegicus]
|
KAF7639577.1 Rad60-SLD_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR029071+36-139+|IPR039540+39-146+|IPR040015+38-145+
|
— |
PF13881+39-146+Ubiquitin-2_like_Rad60_SUMO-like
|
— |
PTHR13169+38-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-149
|
2gow_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
16379.610
|
6.321
|
-0.500
|
25.503
|
8.725
|
52.349
|
47.651
|
13.423
|
12.081
|
53.691
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1110.279
|
1202.863
|
1298.310
|
625.591
|
381.425
|
737.247
|
671.516
|
1593.996
|
1180.636
|
1530.389
|
1380.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.119
|
-1.080
|
-0.945
|
-0.745
|
0.965
|
— |
1.015
|
-1.108
|
— | — | — | — | — |
No JSON data available for plots.