Hg_chrom6_TN10mRNA_12511
Organism: Heterodera glycines Gene Locus: chr6:6982392-6986549 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 0.712 | 1.02 | 0.792 | 2.253 | 1.832 | 0.486 | 0.383 | 0.964 | 1.413 | 1.198 | 1.351 | 0.779 | 0.589 | 1.562 | 1.276 | 0.418 | 0.889 | 0.196 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRLQQSEEEIVQLRKVLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.368
|
0.193
|
0.023
|
0.623
|
0.269
|
0.387
|
0.494
|
0.017
|
0.327
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002340
|
2.000
|
2.000
|
Hsc_gene_6163.t1;Hsc_gene_6163.t2
|
Hsc_gene_6163.t2
|
— |
O76878.1 RILP-like protein homolog [Drosophila melanogaster]
|
KAH7731864.1 Protein RILP-1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.958|GO:0110165_0.958|GO:0005622_0.936|GO:0008150_0.783|GO:0043226_0.769|GO:0016020_0.764|GO:0043229_0.743|GO:0043227_0.704|GO:0005737_0.690|GO:0009987_0.566|GO:0043231_0.532
|
IPR021563+273-296+|IPR034743+3-91_19-83+|IPR034744+269-365+
|
— |
PF09744+19-83+RILP_homology_1_domain|PF11461+273-296+Rab_interacting_lysosomal_protein
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
45020.850
|
4.812
|
-12.500
|
35.459
|
5.612
|
57.143
|
42.857
|
16.327
|
19.133
|
41.071
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
684.605
|
804.420
|
814.847
|
689.279
|
783.693
|
717.128
|
838.016
|
782.044
|
832.141
|
335.005
|
548.063
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.360
|
— |
0.154
|
— |
0.234
|
— |
0.240
|
— | — | — | — | — |
No JSON data available for plots.