Hg_chrom6_TN10mRNA_12512
Organism: Heterodera glycines Gene Locus: chr6:6982392-6986570 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.622 | 1.012 | 0.845 | 2.116 | 1.713 | 0.451 | 0.334 | 0.99 | 1.264 | 1.147 | 1.179 | 0.804 | 1.114 | 1.364 | 1.336 | 0.548 | 0.81 | 0.171 | 0.459 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRLQQSEEEIVQLRKVLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.397
|
0.195
|
0.023
|
0.629
|
0.260
|
0.357
|
0.467
|
0.016
|
0.349
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002340
|
2.000
|
2.000
|
Hsc_gene_6163.t1;Hsc_gene_6163.t2
|
Hsc_gene_6163.t1
|
— |
O76878.1 RILP-like protein homolog [Drosophila melanogaster]
|
KAH7731864.1 Protein RILP-1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.966|GO:0110165_0.966|GO:0005622_0.935|GO:0008150_0.789|GO:0016020_0.770|GO:0043226_0.768|GO:0043229_0.752|GO:0043227_0.703|GO:0005737_0.677|GO:0009987_0.581|GO:0043231_0.531|GO:0071944_0.512|GO:0005886_0.506
|
IPR021563+273-296+|IPR034743+3-91_19-83+|IPR034744+269-345+|IPR051241+13-384+
|
— |
PF09744+19-83+RILP_homology_1_domain|PF11461+273-296+Rab_interacting_lysosomal_protein
|
— |
PTHR21502+13-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;288-401;449-449
|
2.000
|
2-287;402-448
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
50747.230
|
4.696
|
-16.500
|
33.185
|
5.345
|
55.234
|
44.766
|
14.922
|
18.263
|
45.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
684.605
|
804.420
|
814.847
|
689.279
|
783.693
|
717.128
|
838.016
|
782.044
|
832.141
|
335.005
|
548.063
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.360
|
— |
0.154
|
— |
0.234
|
— |
0.240
|
— | — | — | — | — |
No JSON data available for plots.