Hg_chrom6_TN10mRNA_12515
Organism: Heterodera glycines Gene Locus: chr6:6996355-6997415 Feature type: polypeptideProtein Sequence
Length: 84
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 3.045 | 0.649 | 0.821 | 0.794 | 1.526 | 1.276 | 0.0 | 0.794 | 0.644 | 0.361 | 0.7 | 1.653 | 0.458 | 1.215 | 0.68 | 0.976 | 1.443 | 0.916 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.710
|
0.492
|
0.019
|
0.439
|
0.067
|
0.036
|
0.032
|
0.022
|
0.033
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010771
|
1.000
|
1.000
|
Hsc_gene_6161.t1
|
Hsc_gene_6161.t1
|
— |
Q8HXM1.1 Cleavage stimulation factor subunit 2 [Bos taurus]
|
KAI1701066.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.827|GO:0005575_0.759|GO:0110165_0.744|GO:0003674_0.676|GO:0005488_0.663|GO:0005622_0.634|GO:0009987_0.620|GO:0016020_0.589|GO:0043226_0.576|GO:0043229_0.573|GO:0008152_0.545|GO:0043227_0.544|GO:0043170_0.539|GO:0043231_0.537|GO:0044238_0.532|GO:0097159_0.524|GO:0003676_0.519
|
IPR000504+6-84_7-80_8-78+|IPR012677+2-84+|IPR035979+4-82+
|
SM00360+7-80+
|
PF00076+8-78+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000748+1-84+RNA_Binding_Motif_protein_homolog
|
PTHR45735+3-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-84
|
1p1t_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
9206.190
|
6.162
|
0.000
|
16.667
|
10.714
|
46.429
|
53.571
|
8.333
|
8.333
|
60.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
pink
|
10711.962
|
11972.255
|
7298.951
|
12062.058
|
11107.762
|
8755.194
|
6600.280
|
9158.390
|
6878.673
|
16597.747
|
12432.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.944
|
-0.126
|
0.834
|
-0.151
|
-0.328
|
-0.398
|
— |
-0.330
|
-1.379
|
— | — | — | — |
No JSON data available for plots.