Hg_chrom6_TN10mRNA_12516
Organism: Heterodera glycines Gene Locus: chr6:6997417-6999343 Feature type: polypeptideProtein Sequence
Length: 206
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.452 | 1.016 | 0.971 | 0.502 | 1.214 | 0.747 | 0.578 | 1.456 | 1.51 | 0.984 | 0.736 | 3.141 | 2.023 | 0.373 | 1.288 | 1.318 | 0.716 | 1.397 | 0.373 | 1.142 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11789
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-21
|
0.911
|
0.999
|
1.000
|
1.000
|
0.034
|
0.193
|
0.006
|
0.171
|
0.688
|
0.288
|
0.788
|
0.128
|
0.512
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010772
|
1.000
|
1.000
|
Hsc_gene_6160.t1
|
Hsc_gene_6160.t1
|
— |
O17528.1 Suppressor/enhancer of lin-12 protein 9 [Caenorhabditis elegans]
|
KAH7731863.1 SEL-9 protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.911|GO:0016020_0.811|GO:0005622_0.788|GO:0005737_0.776|GO:0071944_0.708|GO:0043226_0.699|GO:0005886_0.691|GO:0043227_0.678|GO:0043229_0.678|GO:0043231_0.666|GO:0008150_0.624|GO:0009987_0.566|GO:0005773_0.565|GO:0012505_0.537
|
IPR009038+21-201_24-201_31-113+|IPR015720+5-201+|IPR036598+30-121+
|
SM01190+21-201+
|
PF01105+24-201+emp24/gp25L/p24_family/GOLD
|
— |
PTHR22811+5-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
5azw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
23860.460
|
6.491
|
0.000
|
26.699
|
14.563
|
47.573
|
52.427
|
14.078
|
12.621
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |