Hg_chrom6_TN10mRNA_12517
Organism: Heterodera glycines Gene Locus: chr6:6999513-7002925 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 2.108 | 1.149 | 0.379 | 1.832 | 2.184 | 0.425 | 0.824 | 0.855 | 1.299 | 0.916 | 2.747 | 0.839 | 0.317 | 1.009 | 1.02 | 1.216 | 0.541 | 0.211 | 0.242 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11790
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.733
|
0.151
|
0.006
|
0.579
|
0.043
|
0.098
|
0.148
|
0.005
|
0.097
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010773
|
1.000
|
1.000
|
Hsc_gene_6159.t1
|
Hsc_gene_6159.t1
|
— |
G5ECG0.1 Transforming acid coiled-coil-containing protein 1 [Caenorhabditis elegans]
|
KAI1731697.1 transforming acidic coiled-coil-containing protein (TACC) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007052
|
GO:0005575_0.934|GO:0110165_0.850|GO:0005622_0.845|GO:0008150_0.767|GO:0003674_0.766|GO:0005488_0.766|GO:0005515_0.746|GO:0009987_0.726|GO:0065007_0.725|GO:0050789_0.713|GO:0050794_0.692|GO:0005737_0.648|GO:0043226_0.632|GO:0043229_0.615|GO:0071840_0.551|GO:0016043_0.548
|
IPR007707+199-339+|IPR039915+80-342+
|
— |
PF05010+199-339+Transforming_acidic_coiled-coil-containing_protein_(TACC),_C-terminal
|
— |
PTHR13924+80-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94;150-218;322-364
|
2.000
|
95-149;219-321
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
41603.150
|
4.466
|
-20.000
|
29.945
|
5.769
|
62.088
|
37.912
|
12.637
|
17.308
|
45.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
1718.085
|
1133.136
|
1044.896
|
1050.093
|
1220.186
|
1905.296
|
2094.059
|
2248.567
|
2680.733
|
1494.984
|
2003.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.346
|
-0.247
|
0.116
|
0.185
|
0.657
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.