Hg_chrom6_TN10mRNA_12518
Organism: Heterodera glycines Gene Locus: chr6:7003099-7007227 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 0.945 | 0.914 | 0.267 | 1.193 | 0.992 | 0.368 | 1.257 | 1.418 | 1.255 | 0.703 | 1.479 | 2.74 | 0.67 | 1.895 | 1.437 | 0.729 | 0.557 | 0.298 | 0.683 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11791
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
12-62
|
0.994
|
43-63
|
0.926
|
— | — |
0.000
|
— | — |
0.124
|
0.720
|
0.234
|
0.350
|
0.366
|
0.231
|
0.340
|
0.237
|
0.255
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002342
|
1.000
|
3.000
|
Hsc_gene_6158.t1;Hsc_gene_6158.t2;Hsc_gene_6158.t3
|
Hsc_gene_6158.t1
|
— |
Q9CTY5.2 Calcium uptake protein 3, mitochondrial [Mus musculus]
|
KAI1731696.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0006851
|
GO:0008150_0.950|GO:0009987_0.867|GO:0005575_0.773|GO:0003674_0.772|GO:0110165_0.768|GO:0051179_0.743|GO:0051234_0.739|GO:0006810_0.732|GO:0005488_0.715|GO:0006811_0.678|GO:0006812_0.675|GO:0030001_0.675|GO:0006816_0.670|GO:0055085_0.649|GO:0005515_0.645|GO:0034220_0.643|GO:0098660_0.641|GO:0098655_0.640|GO:0098662_0.640|GO:0006839_0.636|GO:0006851_0.636|GO:0070588_0.636|GO:1990542_0.636|GO:0005622_0.616|GO:0016020_0.602|GO:0043226_0.588|GO:0043229_0.578|GO:0036444_0.542|GO:0170036_0.542|GO:0043227_0.531|GO:0005737_0.526|GO:0043231_0.520
|
IPR002048+451-486+|IPR011992+118-193_168-482+|IPR018247+464-476+|IPR039800+65-510+
|
— | — | — |
PTHR12294+65-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-517
|
6eaz_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
60250.760
|
9.594
|
15.500
|
28.627
|
15.087
|
51.064
|
48.936
|
16.441
|
12.186
|
41.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1673.272
|
1630.362
|
1466.651
|
1171.920
|
927.509
|
945.504
|
1224.522
|
1451.509
|
776.570
|
3431.397
|
2293.614
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.384
|
-0.614
|
-0.214
|
-0.369
|
— |
0.382
|
0.511
|
— | — | — | — | — | — |
No JSON data available for plots.