Hg_chrom6_TN10mRNA_12521
Organism: Heterodera glycines Gene Locus: chr6:7016487-7020715 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.061 | 1.061 | 0.763 | 0.566 | 0.973 | 0.983 | 0.782 | 1.46 | 0.73 | 1.011 | 0.691 | 1.61 | 1.115 | 1.123 | 0.819 | 1.382 | 1.466 | 0.885 | 1.263 | 0.966 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.413
|
— | — |
0.094
|
0.036
|
0.006
|
0.208
|
0.482
|
0.705
|
0.746
|
0.015
|
0.445
|
0.362
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004428
|
2.000
|
1.000
|
Hsc_gene_10556.t1
|
Hsc_gene_10556.t1
|
— |
Q6UX71.1 Plexin domain-containing protein 2 [Homo sapiens]
|
KAI1731693.1 plexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.744|GO:0071944_0.694
|
IPR031152+76-537+
|
— | — | — |
PTHR13055+76-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
69-117;398-486
|
3.000
|
1-68;118-397;487-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
60055.420
|
6.500
|
0.000
|
21.533
|
11.861
|
48.540
|
51.460
|
11.496
|
10.036
|
56.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3077.142
|
12757.492
|
3828.157
|
2820.055
|
2985.099
|
4008.214
|
1921.912
|
2971.538
|
889.971
|
1060.344
|
987.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.966
|
-2.315
|
-0.333
|
— |
0.441
|
-1.051
|
-0.536
|
-0.487
|
— | — | — | — | — |
No JSON data available for plots.