Hg_chrom6_TN10mRNA_12522
Organism: Heterodera glycines Gene Locus: chr6:7021788-7024032 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.171 | 0.828 | 0.992 | 1.039 | 1.23 | 1.056 | 0.839 | 1.013 | 1.361 | 0.799 | 1.27 | 0.999 | 0.415 | 1.028 | 1.199 | 1.337 | 0.945 | 0.369 | 0.846 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11795
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.246
|
0.015
|
0.682
|
0.192
|
0.190
|
0.229
|
0.166
|
0.226
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010774
|
1.000
|
1.000
|
Hsc_gene_10554.t1
|
— | — |
Q5F3E8.1 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 [Gallus gallus]
|
KAH7731855.1 K+ channel tetramerization domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0051260
|
GO:0008150_0.878|GO:0005575_0.811|GO:0110165_0.809|GO:0009987_0.736|GO:0065007_0.710|GO:0050789_0.696|GO:0003674_0.649|GO:0005622_0.606|GO:0050794_0.600|GO:0005488_0.588|GO:0016020_0.581|GO:0005515_0.542|GO:0050896_0.539|GO:0051716_0.501
|
IPR000210+25-93_25-125+|IPR003131+27-117+|IPR011333+20-125_25-119+|IPR045068+14-278+
|
SM00225+25-125+
|
PF02214+27-117+BTB/POZ_domain
|
G3DSA:3.30.710.10:FF:000046+21-124+BTB/POZ_domain-containing_protein_KCTD7_isoform_X1
|
PTHR11145+14-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;337-417
|
1.000
|
5-336
|
5fta_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
45548.570
|
6.801
|
1.500
|
22.782
|
8.633
|
49.161
|
50.839
|
11.990
|
10.791
|
53.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1047.543
|
1021.530
|
1036.174
|
843.067
|
956.453
|
971.199
|
2092.706
|
1276.385
|
1125.573
|
664.751
|
862.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.208
|
-0.414
|
-0.189
|
0.150
|
— |
1.119
|
0.289
|
0.857
|
— | — | — | — | — |
No JSON data available for plots.