Hg_chrom6_TN10mRNA_12526
Organism: Heterodera glycines Gene Locus: chr6:7051950-7053812 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.638 | 1.459 | 1.569 | 0.811 | 1.176 | 0.804 | 0.7 | 1.765 | 0.871 | 1.378 | 0.772 | 1.384 | 1.416 | 0.679 | 1.441 | 0.952 | 0.643 | 1.01 | 1.207 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11799
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.562
|
0.268
|
0.027
|
0.566
|
0.217
|
0.221
|
0.103
|
0.122
|
0.093
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010777
|
1.000
|
1.000
|
Hsc_gene_10548.t1
|
Hsc_gene_10548.t1
|
— |
Q9N4D9.2 Alpha N-terminal protein methyltransferase 1 [Caenorhabditis elegans]
|
KAI1706570.1 adoMet dependent proline di-methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006480|GO:0008168
|
GO:0008150_0.843|GO:0003674_0.776|GO:0005575_0.764|GO:0110165_0.761|GO:0005622_0.720|GO:0003824_0.668|GO:0016740_0.605|GO:0008152_0.604|GO:0140096_0.589|GO:0044238_0.584|GO:0043170_0.570|GO:0008168_0.565|GO:0016741_0.565|GO:0008276_0.560|GO:0009987_0.544|GO:0019538_0.528|GO:0016020_0.512|GO:0043226_0.502
|
IPR008576+1-246_18-243_21-242+|IPR029063+14-242_20-240+
|
— |
PF05891+21-242+AdoMet_dependent_proline_di-methyltransferase
|
— |
PTHR12753+18-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;249-255
|
1.000
|
9-248
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
29128.800
|
5.592
|
-4.500
|
31.373
|
11.765
|
51.373
|
48.627
|
15.686
|
15.686
|
49.412
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
495.892
|
387.344
|
294.016
|
318.651
|
419.325
|
336.152
|
883.596
|
337.377
|
623.720
|
585.564
|
601.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.626
|
-0.419
|
0.223
|
0.364
|
-0.304
|
1.405
|
— |
1.531
|
— | — | — | — | — |
No JSON data available for plots.