Hg_chrom6_TN10mRNA_12527
Organism: Heterodera glycines Gene Locus: chr6:7054463-7056324 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.45 | 1.05 | 0.469 | 1.78 | 0.645 | 0.579 | 0.845 | 1.29 | 1.29 | 1.221 | 0.538 | 1.139 | 3.674 | 0.868 | 1.382 | 0.922 | 0.635 | 1.173 | 1.737 | 0.854 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11800
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.837
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— |
RRNFREVFGADRRKWF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.037
|
0.075
|
0.004
|
0.251
|
0.631
|
0.411
|
0.733
|
0.000
|
0.454
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004430
|
2.000
|
1.000
|
Hsc_gene_10547.t1
|
Hsc_gene_10547.t1;Hsc_gene_10547.t2
|
— |
P59267.1 Palmitoyltransferase ZDHHC2 [Mus musculus]
|
KAH7731840.1 Zinc finger DHHC domain containing protein 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.900|GO:0005575_0.865|GO:0110165_0.865|GO:0009987_0.834|GO:0016020_0.825|GO:0071944_0.771|GO:0005886_0.762|GO:0003674_0.714|GO:0005622_0.698|GO:0043226_0.676|GO:0005737_0.667|GO:0043227_0.665|GO:0043229_0.635|GO:0005773_0.633|GO:0043231_0.633|GO:0012505_0.592|GO:0008152_0.561|GO:0003824_0.549|GO:0044237_0.545|GO:0044238_0.527|GO:0009058_0.523|GO:0016740_0.522|GO:0043170_0.510|GO:0016746_0.509|GO:0019538_0.509|GO:0044249_0.507|GO:0051179_0.507
|
IPR001594+128-249+
|
— |
PF01529+128-249+DHHC_palmitoyltransferase
|
— |
PTHR12246+16-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-310
|
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
36020.210
|
8.788
|
16.000
|
19.355
|
20.968
|
36.452
|
63.548
|
12.903
|
6.452
|
45.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellowgreen
|
587.519
|
519.653
|
494.878
|
524.169
|
636.413
|
746.995
|
806.792
|
977.052
|
211.717
|
646.875
|
460.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.299
|
-0.125
|
0.191
|
0.248
|
0.246
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.