Hg_chrom6_TN10mRNA_12528
Organism: Heterodera glycines Gene Locus: chr6:7056794-7058684 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.26 | 0.945 | 0.443 | 0.093 | 0.587 | 1.112 | 0.871 | 1.22 | 1.204 | 0.916 | 1.396 | 0.956 | 0.903 | 0.99 | 2.212 | 0.852 | 0.755 | 1.273 | 1.042 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11801
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KVKKAEAKESEGKQK,KRFRAGKGKRRNRRYKQK
|
108-131
|
0.994
|
52-107
|
0.868
|
— | — |
0.000
|
— | — |
0.326
|
0.161
|
0.043
|
0.451
|
0.190
|
0.086
|
0.067
|
0.004
|
0.047
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010778
|
1.000
|
1.000
|
Hsc_gene_10546.t1
|
Hsc_gene_10546.t1
|
— |
O02056.3 Large ribosomal subunit protein uL4 [Caenorhabditis elegans]
|
KAF7639561.1 Ribos_L4_asso_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.826|GO:0110165_0.826|GO:0005622_0.724|GO:0043226_0.650|GO:0043229_0.640|GO:0005737_0.569|GO:0008150_0.562|GO:0003674_0.536|GO:0043228_0.535|GO:0043232_0.535
|
IPR002136+21-260+|IPR013000+115-141+|IPR023574+1-302_6-260+|IPR025755+274-349+|IPR045240+1-367+
|
— |
PF00573+21-260+Ribosomal_protein_L4/L1_family|PF14374+274-349+60S_ribosomal_protein_L4_C-terminal_domain
|
G3DSA:3.40.1370.10:FF:000002+1-302+60S_ribosomal_protein_L4
|
PTHR19431+1-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;345-369
|
1.000
|
12-344
|
9cai_CC
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
41255.100
|
12.024
|
56.500
|
28.455
|
9.214
|
47.425
|
52.575
|
22.493
|
5.962
|
49.051
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
9892.340
|
4500.574
|
7419.822
|
15452.032
|
16083.240
|
12676.235
|
7534.850
|
3616.763
|
12581.267
|
8611.721
|
10312.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.493
|
1.643
|
1.166
|
— |
-0.328
|
-0.740
|
-1.917
|
1.203
|
— | — | — | — | — |
No JSON data available for plots.