Hg_chrom6_TN10mRNA_12530
Organism: Heterodera glycines Gene Locus: chr6:7067323-7067812 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.329 | 1.299 | 0.0 | 0.238 | 1.099 | 1.361 | 1.429 | 0.952 | 1.158 | 0.433 | 2.521 | 1.984 | 0.824 | 0.875 | 0.612 | 1.171 | 0.433 | 1.099 | 1.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11803
|
— | — |
1.444
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.672
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|nuclear_localization_signal
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.306
|
0.172
|
0.086
|
0.371
|
0.102
|
0.242
|
0.162
|
0.002
|
0.464
|
0.895
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004428
|
2.000
|
1.000
|
Hsc_gene_10556.t1
|
Hsc_gene_10556.t1
|
— |
Q6DE92.1 Plexin domain-containing protein 2 [Xenopus laevis]
|
KAK6026684.1 phosphodiesterase family protein [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.892|GO:0110165_0.705
|
IPR031152+3-67+
|
— | — | — |
PTHR13055+3-67+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
64-70
|
1.000
|
1-63
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
7759.730
|
6.446
|
0.000
|
18.571
|
17.143
|
40.000
|
60.000
|
10.000
|
8.571
|
52.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
85.836
|
117.082
|
56.881
|
35.708
|
18.403
|
23.214
|
26.133
|
93.723
|
24.878
|
217.694
|
135.059
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.273
|
-1.851
|
-0.563
|
-0.992
|
— | — |
1.913
|
-1.703
|
— | — | — | — | — |
No JSON data available for plots.