Hg_chrom6_TN10mRNA_12533
Organism: Heterodera glycines Gene Locus: chr6:7075252-7080891 Feature type: polypeptideProtein Sequence
Length: 594
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.135 | 1.018 | 0.704 | 0.348 | 1.122 | 0.907 | 0.842 | 0.842 | 1.085 | 1.365 | 0.842 | 2.575 | 1.309 | 0.874 | 1.58 | 0.914 | 0.856 | 1.148 | 0.13 | 0.198 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11806
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRPR,RRVRRQK
|
— | — | — | — |
1-21
|
0.914
|
0.999
|
0.000
|
0.000
|
0.214
|
0.523
|
0.068
|
0.202
|
0.097
|
0.070
|
0.104
|
0.234
|
0.254
|
0.908
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010782
|
1.000
|
1.000
|
Hsc_gene_19378.t1
|
Hsc_gene_19378.t1
|
— | — |
KAH7731845.1 Protein C06E8.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
— |
IPR001124+346-564_346-567+|IPR017943+317-568+|IPR032942+21-581+
|
SM00329+346-564+
|
PF02886+346-567+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+21-581+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-594
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
65378.880
|
10.202
|
21.000
|
25.589
|
7.239
|
45.118
|
54.882
|
14.983
|
10.606
|
49.832
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1400.824
|
504.988
|
274.144
|
67.141
|
331.643
|
10508.761
|
56.169
|
2267.403
|
17.579
|
861.577
|
499.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.111
|
-3.048
|
-1.920
|
2.271
|
5.002
|
-7.538
|
-2.332
|
-5.187
|
-5.731
|
— | — | — | — |