Hg_chrom6_TN10mRNA_12536
Organism: Heterodera glycines Gene Locus: chr6:7086991-7090324 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 0.522 | 0.699 | 0.884 | 0.801 | 0.657 | 0.42 | 1.442 | 1.496 | 1.819 | 0.437 | 1.885 | 1.692 | 0.925 | 1.439 | 1.236 | 1.103 | 1.263 | 0.74 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11808
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
mitochondria
|
— |
50-70
|
0.999
|
— | — | — |
0.506
|
0.000
|
5.000
|
— |
0.023
|
0.190
|
0.029
|
0.066
|
0.826
|
0.301
|
0.478
|
0.009
|
0.632
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002240
|
3.000
|
1.000
|
Hsc_gene_19375.t1
|
Hsc_gene_19375.t1;Hsc_gene_19375.t2
|
— |
Q965Q4.1 Putative phosphatidylcholine:ceramide cholinephosphotransferase 3 [Caenorhabditis elegans]
|
KAI1731674.1 putative phosphatidylcholine:ceramide cholinephosphotransferase 3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016780
|
GO:0008150_0.853|GO:0009987_0.758|GO:0005575_0.731|GO:0110165_0.731|GO:0003674_0.685|GO:0016020_0.675|GO:0008152_0.649|GO:0005886_0.648|GO:0071944_0.648|GO:0009058_0.632|GO:0044238_0.599|GO:0044237_0.596|GO:0044249_0.580|GO:0003824_0.555|GO:0005622_0.552|GO:0006629_0.550|GO:0008610_0.549|GO:0044255_0.544|GO:0006643_0.536|GO:0006665_0.536|GO:0030148_0.536|GO:0046467_0.536|GO:0016740_0.534|GO:0005737_0.521|GO:0043226_0.516
|
IPR025749+157-229+|IPR045221+14-291+
|
— |
PF14360+157-229+PAP2_superfamily_C-terminal
|
— |
PTHR21290+14-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
35396.610
|
8.306
|
8.500
|
21.474
|
12.500
|
41.667
|
58.333
|
12.821
|
8.654
|
46.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
933.206
|
1099.812
|
874.960
|
778.164
|
585.698
|
575.367
|
666.701
|
3614.098
|
313.800
|
774.377
|
576.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.559
|
-0.636
|
— |
-0.441
|
— |
0.222
|
2.553
|
-2.300
|
— | — | — | — | — |