Hg_chrom6_TN10mRNA_12537
Organism: Heterodera glycines Gene Locus: chr6:7090333-7101191 Feature type: polypeptideProtein Sequence
Length: 1,675
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 0.958 | 0.934 | 0.926 | 0.627 | 1.179 | 0.725 | 1.791 | 1.353 | 1.549 | 0.552 | 0.983 | 0.995 | 1.045 | 0.987 | 1.313 | 0.94 | 0.923 | 0.918 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11809
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RHRR
|
— | — |
7-42
|
0.992
|
— | — |
0.000
|
— | — |
0.341
|
0.149
|
0.031
|
0.540
|
0.284
|
0.497
|
0.391
|
0.048
|
0.349
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004431
|
1.000
|
2.000
|
Hsc_gene_19374.t1;Hsc_gene_19374.t2
|
Hsc_gene_19374.t1;Hsc_gene_19374.t2
|
— |
Q9Y4E6.2 WD repeat-containing protein 7 [Homo sapiens]
|
KAI1731686.1 WD repeat-containing protein 72 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.724|GO:0110165_0.724|GO:0008150_0.635|GO:0005622_0.613|GO:0009987_0.588|GO:0016020_0.571|GO:0071944_0.527|GO:0005737_0.525
|
IPR001680+14-56_63-104_66-104_460-506_469-506_557-596_1531-1570_1572-1612_1577-1611+|IPR015943+22-315_343-665_1521-1637+|IPR036322+27-608_29-285+|IPR049916+16-1674+
|
SM00320+14-56_63-104_460-506_557-596_1531-1570_1572-1612+
|
PF00400+66-104_469-506_1577-1611+WD_domain,_G-beta_repeat
|
— |
PTHR44099+16-1674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1090-1283
|
2.000
|
1-1089;1284-1675
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
182033.430
|
7.222
|
23.000
|
20.955
|
9.851
|
44.597
|
55.403
|
12.060
|
8.896
|
54.090
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1046.540
|
2899.859
|
1110.075
|
886.564
|
874.765
|
881.165
|
998.855
|
858.043
|
422.206
|
1070.959
|
792.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.615
|
-1.847
|
-0.216
|
— | — |
0.190
|
— |
0.360
|
— | — | — | — | — |
No JSON data available for plots.