Hg_chrom6_TN10mRNA_12539
Organism: Heterodera glycines Gene Locus: chr6:7102278-7103476 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.831 | 1.299 | 1.355 | 0.952 | 0.549 | 0.51 | 0.893 | 1.19 | 1.4 | 0.974 | 1.471 | 1.091 | 0.755 | 1.312 | 1.378 | 1.171 | 0.812 | 0.275 | 0.945 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11811
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRNDVTYNAVTKKLKS
|
11-31
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.717
|
0.188
|
0.010
|
0.474
|
0.092
|
0.093
|
0.077
|
0.006
|
0.053
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010785
|
1.000
|
1.000
|
Hsc_gene_19372.t1
|
Hsc_gene_19372.t1
|
— |
Q5XJQ5.1 Exosome complex component RRP45 [Danio rerio]
|
KAH7731835.1 exosome complex component RRP45-like protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.814|GO:0110165_0.805|GO:0005622_0.729|GO:0016020_0.717|GO:0005737_0.683|GO:0043226_0.673|GO:0008150_0.670|GO:0043229_0.648|GO:0043227_0.629|GO:0043231_0.625|GO:0009987_0.610|GO:0005634_0.534|GO:0008152_0.511|GO:0003674_0.510
|
IPR001247+47-163+|IPR015847+195-259+|IPR020568+8-217+|IPR027408+6-280+|IPR036345+189-275+|IPR050590+11-274+
|
— |
PF01138+47-163+3'_exoribonuclease_family,_domain_1|PF03725+195-259+3'_exoribonuclease_family,_domain_2
|
— |
PTHR11097+11-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-280
|
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
31368.910
|
7.194
|
2.500
|
27.500
|
9.286
|
50.000
|
50.000
|
14.643
|
12.857
|
51.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
519.568
|
252.636
|
291.298
|
441.940
|
546.994
|
373.065
|
627.846
|
348.607
|
173.656
|
1061.973
|
681.266
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.670
|
0.712
|
0.276
|
-0.537
|
0.762
|
— |
0.992
|
-2.742
|
— | — | — | — |
No JSON data available for plots.