Hg_chrom6_TN10mRNA_12544
Organism: Heterodera glycines Gene Locus: chr6:7126157-7128515 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 1.096 | 1.347 | 1.045 | 1.403 | 0.863 | 0.321 | 1.684 | 1.197 | 1.274 | 1.275 | 1.188 | 1.403 | 0.712 | 1.099 | 0.577 | 1.159 | 1.071 | 1.554 | 0.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11816
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.462
|
0.449
|
0.032
|
0.554
|
0.081
|
0.084
|
0.098
|
0.009
|
0.111
|
0.430
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010789
|
1.000
|
1.000
|
Hsc_gene_19368.t1
|
Hsc_gene_19368.t1
|
— |
P48507.1 Glutamate--cysteine ligase regulatory subunit [Homo sapiens]
|
KAI1699932.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006750|GO:0035226
|
GO:0008150_0.891|GO:0005575_0.852|GO:0110165_0.852|GO:0009987_0.830|GO:0005622_0.796|GO:0005737_0.742|GO:0003674_0.726|GO:0008152_0.677|GO:0044237_0.650|GO:0065007_0.576|GO:0050896_0.542
|
IPR023210+93-230+|IPR032963+24-291+|IPR036812+19-257_93-232+
|
— |
PF00248+93-230+Aldo/keto_reductase_family
|
— |
PTHR13295+24-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
34365.380
|
6.341
|
-1.000
|
32.997
|
11.448
|
52.189
|
47.811
|
17.172
|
15.825
|
46.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
861.802
|
659.910
|
603.573
|
834.090
|
1204.867
|
980.037
|
1095.518
|
609.288
|
926.993
|
829.907
|
871.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.358
|
0.201
|
0.575
|
0.498
|
-0.283
|
— |
-0.788
|
0.989
|
— | — | — | — | — |
No JSON data available for plots.