SCN Proteipedia

Hg_chrom6_TN10mRNA_12545

Organism: Heterodera glycines Gene Locus: chr6:7128814-7147846 Feature type: polypeptide

Protein Sequence

Length: 2,578

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.78	1.227	1.03	0.642	1.047	1.293	0.623	1.532	1.017	1.462	0.646	1.278	1.358	0.783	1.116	1.175	1.011	0.987	1.044	0.685	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11817	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|lysosome_vacuole	—	RRRRRFVQNPWGKRHKL,KKKIFWKLDVWEDDSRRRR,KKIFWKLDVWEDDSRRRRR	—	—	—	—	—	—	0.000	—	—	0.305	0.176	0.019	0.478	0.216	0.635	0.386	0.027	0.424	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000901	2.000	4.000	Hsc_gene_19360.t1;Hsc_gene_19361.t1;Hsc_gene_19367.t1;Hsc_gene_19367.t2	Hsc_gene_19361.t1;Hsc_gene_19365.t1;Hsc_gene_19367.t1;Hsc_gene_19367.t2	—	A8XSV3.1 Putative neurobeachin homolog [Caenorhabditis briggsae]	KAI6202519.1 Rugose [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.920\|GO:0005575_0.863\|GO:0009987_0.861\|GO:0110165_0.856\|GO:0005622_0.724\|GO:0016020_0.640\|GO:0005737_0.610\|GO:0016043_0.570\|GO:0071840_0.570\|GO:0051179_0.535\|GO:0065007_0.527\|GO:0050896_0.523	IPR000409+1861-2151_1873-2151_1874-2151+\|IPR001680+2322-2365_2383-2422_2470-2511_2514-2553+\|IPR010508+1541-1680+\|IPR011993+1739-1841+\|IPR013320+292-480+\|IPR015943+2197-2467_2468-2576+\|IPR023362+1734-1842_1746-1841+\|IPR031570+541-1012+\|IPR036322+2264-2556+\|IPR036372+1849-2151_1862-2151+\|IPR046851+2265-2557+\|IPR046852+153-290+\|IPR050865+58-2553+	SM00320+2322-2365_2383-2422_2470-2511_2514-2553+\|SM01026+1873-2151+	PF02138+1874-2151+Beige/BEACH_domain\|PF06469+1541-1680+Neurobeachin-like,_DUF1088\|PF13385+307-467+Concanavalin_A-like_lectin/glucanases_superfamily\|PF14844+1746-1841+PH_domain_associated_with_Beige/BEACH\|PF15787+541-1012+Neurobeachin/BDCP,_DUF4704_alpha_solenoid_region\|PF20425+153-290+Neurobeachin_alpha_solenoid_region\|PF20426+2265-2557+Neurobeachin_beta_propeller_domain	G3DSA:1.10.1540.10:FF:000001+1863-2151+neurobeachin_isoform_X1	PTHR13743+58-2553+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-128;1285-1460;1657-1705;2575-2578	3.000	129-1284;1461-1656;1706-2574	1t77_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.565	290328.970	6.141	-17.500	24.748	11.637	49.457	50.543	12.801	11.947	49.728

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	magenta	3508.336	6233.596	3227.231	2855.202	3458.589	5467.171	5194.350	2927.561	2952.021	2123.566	2478.618

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.178	-1.264	—	0.245	0.675	—	-1.004	0.968	—	—	—	—	—

No JSON data available for plots.

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