Hg_chrom6_TN10mRNA_12548
Organism: Heterodera glycines Gene Locus: chr6:7147526-7149874 Feature type: polypeptideProtein Sequence
Length: 402
(Signal peptide: 1-38)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.273 | 0.81 | 0.678 | 0.6 | 0.954 | 1.276 | 0.592 | 0.995 | 0.719 | 1.311 | 0.716 | 0.439 | 1.036 | 3.062 | 0.914 | 1.244 | 0.856 | 0.754 | 0.383 | 0.146 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11819
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-38
|
0.838
|
0.927
|
0.000
|
0.000
|
0.357
|
0.129
|
0.025
|
0.719
|
0.139
|
0.175
|
0.189
|
0.035
|
0.140
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010791
|
1.000
|
1.000
|
Hsc_gene_19364.t1
|
Hsc_gene_19364.t1
|
— | — |
KAI1725266.1 filamentous hemagglutinin [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-266
|
2.000
|
1-41;267-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
42761.720
|
7.120
|
3.000
|
20.647
|
6.716
|
43.035
|
56.965
|
11.194
|
9.453
|
59.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
magenta
|
435.753
|
173.407
|
21.865
|
61.358
|
579.414
|
1534.467
|
43.724
|
297.983
|
18.642
|
875.357
|
508.193
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.215
|
-1.636
|
1.596
|
3.208
|
1.421
|
-5.122
|
-2.474
|
-2.623
|
— | — | — | — | — |