Hg_chrom6_TN10mRNA_12549
Organism: Heterodera glycines Gene Locus: chr6:7154250-7160601 Feature type: polypeptideProtein Sequence
Length: 1,010
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.151 | 1.128 | 0.486 | 0.512 | 0.495 | 2.539 | 1.002 | 2.327 | 0.682 | 1.097 | 0.39 | 0.932 | 1.1 | 1.104 | 0.929 | 1.669 | 1.136 | 0.795 | 0.228 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KYIKEKKRRK
|
— | — | — | — | — | — |
0.002
|
— | — |
0.623
|
0.082
|
0.066
|
0.324
|
0.147
|
0.107
|
0.195
|
0.012
|
0.128
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010792
|
1.000
|
1.000
|
Hsc_gene_19363.t1
|
— | — | — |
KAH7731631.1 BESS motif family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006578+284-383_285-359+
|
SM00595+284-383+
|
PF10545+285-359+Alcohol_dehydrogenase_transcription_factor_Myb/SANT-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-251;425-589;678-1010
|
3.000
|
1-133;252-424;590-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
107725.830
|
9.136
|
38.500
|
17.426
|
10.297
|
50.792
|
49.208
|
11.782
|
5.644
|
56.931
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2759.711
|
5087.012
|
4819.483
|
2852.537
|
1771.974
|
2007.434
|
3169.611
|
3264.876
|
3234.402
|
1033.087
|
1976.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.307
|
-0.972
|
-0.648
|
-0.719
|
0.194
|
0.669
|
0.600
|
— |
1.523
|
— | — | — | — |
No JSON data available for plots.