Hg_chrom6_TN10mRNA_12550
Organism: Heterodera glycines Gene Locus: chr6:7161042-7167097 Feature type: polypeptideProtein Sequence
Length: 828
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.236 | 1.376 | 0.747 | 0.625 | 0.745 | 1.332 | 0.604 | 1.691 | 1.261 | 1.24 | 0.75 | 1.137 | 0.738 | 1.092 | 1.282 | 1.38 | 0.792 | 0.97 | 0.465 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11821
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.924
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.301
|
0.093
|
0.005
|
0.754
|
0.067
|
0.138
|
0.192
|
0.050
|
0.444
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001211
|
3.000
|
2.000
|
Hsc_gene_19362.t1;Hsc_gene_19362.t3
|
Hsc_gene_19362.t1;Hsc_gene_19362.t2;Hsc_gene_19362.t3
|
— |
Q6NYW6.1 CLIP-associating protein 2 [Danio rerio]
|
KAI1731776.1 protein CLASP-2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.958|GO:0009987_0.848|GO:0005575_0.780|GO:0110165_0.780|GO:0071840_0.720|GO:0016043_0.718|GO:0005622_0.702|GO:0065007_0.686|GO:0003674_0.682|GO:0050789_0.674|GO:0050794_0.655|GO:0006996_0.649|GO:0016020_0.645|GO:0043226_0.634|GO:0005488_0.626|GO:0007010_0.621|GO:0043229_0.615|GO:0007017_0.612|GO:0097435_0.611|GO:0000226_0.609|GO:0005515_0.590|GO:0043933_0.557|GO:0051179_0.555|GO:0031109_0.545|GO:0071944_0.521|GO:0051128_0.513
|
IPR011989+20-266_598-816+|IPR016024+63-806+|IPR024395+51-265+|IPR034085+47-277_594-828+
|
SM01349+47-277_594-828+
|
PF12348+51-265+CLASP_N_terminal
|
— |
PTHR21567+579-807+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;262-580
|
2.000
|
2-261;581-828
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
90360.940
|
9.708
|
36.000
|
23.188
|
8.213
|
48.792
|
51.208
|
14.614
|
8.575
|
54.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1952.329
|
3314.676
|
1355.719
|
1590.548
|
1875.517
|
1916.349
|
2258.758
|
1595.409
|
973.259
|
2596.380
|
1900.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.519
|
-1.196
|
0.339
|
0.206
|
— |
0.247
|
-0.369
|
0.644
|
— | — | — | — | — |
No JSON data available for plots.