Hg_chrom6_TN10mRNA_12552
Organism: Heterodera glycines Gene Locus: chr6:7168442-7170873 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.168 | 0.685 | 1.443 | 0.837 | 0.966 | 0.747 | 2.092 | 1.023 | 1.527 | 0.571 | 1.231 | 0.697 | 0.805 | 1.452 | 1.255 | 1.029 | 0.571 | 2.575 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11822
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— |
KRRR
|
— | — |
59-109
|
0.950
|
— | — |
0.000
|
— | — |
0.376
|
0.219
|
0.012
|
0.443
|
0.312
|
0.136
|
0.481
|
0.059
|
0.079
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004432
|
3.000
|
0.000
|
0.000
|
— | — |
A8XSV3.1 Putative neurobeachin homolog [Caenorhabditis briggsae]
|
KAI1725271.1 concanavalin a-like lectin/glucanases superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.888|GO:0110165_0.883|GO:0009987_0.881|GO:0005622_0.705|GO:0065007_0.641|GO:0050789_0.630|GO:0016020_0.625|GO:0071840_0.617|GO:0050794_0.616|GO:0016043_0.614|GO:0005737_0.609|GO:0050896_0.598|GO:0051179_0.583|GO:0032501_0.574|GO:0051641_0.564|GO:0003674_0.551
|
IPR031570+18-60+
|
— |
PF15787+18-60+Neurobeachin/BDCP,_DUF4704_alpha_solenoid_region
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
26712.500
|
8.355
|
10.000
|
23.849
|
11.297
|
47.699
|
52.301
|
15.063
|
8.787
|
51.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
473.637
|
579.676
|
845.962
|
502.741
|
394.126
|
394.551
|
358.600
|
627.326
|
159.505
|
563.913
|
390.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.317
|
-0.343
|
-0.643
|
-0.383
|
— | — |
0.564
|
-0.663
|
— | — | — | — | — |
No JSON data available for plots.