Hg_chrom6_TN10mRNA_12553
Organism: Heterodera glycines Gene Locus: chr6:7169057-7170873 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 1.375 | 0.684 | 1.854 | 0.538 | 0.827 | 0.96 | 1.613 | 0.956 | 1.526 | 0.407 | 1.265 | 0.448 | 0.931 | 1.865 | 1.382 | 1.058 | 0.326 | 2.481 | 0.158 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11822
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— |
KRRR
|
42-62
|
0.996
|
6-56
|
0.950
|
— | — |
0.000
|
— | — |
0.317
|
0.201
|
0.012
|
0.412
|
0.331
|
0.088
|
0.517
|
0.023
|
0.059
|
0.386
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004432
|
3.000
|
0.000
|
0.000
|
— | — |
A8XSV3.1 Putative neurobeachin homolog [Caenorhabditis briggsae]
|
KAI1725271.1 concanavalin a-like lectin/glucanases superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0005575_0.890|GO:0110165_0.885|GO:0009987_0.874|GO:0005622_0.704|GO:0016020_0.664|GO:0005737_0.610|GO:0065007_0.608|GO:0071840_0.604|GO:0016043_0.601|GO:0050789_0.596|GO:0050794_0.585|GO:0003674_0.574|GO:0051179_0.571|GO:0050896_0.562|GO:0051641_0.553|GO:0032501_0.538
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
20416.290
|
9.065
|
12.000
|
22.043
|
8.602
|
47.312
|
52.688
|
15.054
|
6.989
|
55.376
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
473.637
|
579.676
|
845.962
|
502.741
|
394.126
|
394.551
|
358.600
|
627.326
|
159.505
|
563.913
|
390.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.317
|
-0.343
|
-0.643
|
-0.383
|
— | — |
0.564
|
-0.663
|
— | — | — | — | — |
No JSON data available for plots.