SCN Proteipedia

Hg_chrom6_TN10mRNA_12555

Organism: Heterodera glycines Gene Locus: chr6:7196978-7201245 Feature type: polypeptide

Protein Sequence

Length: 481

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.894	0.822	0.983	0.43	1.351	0.96	0.941	1.247	1.016	1.208	1.26	1.834	1.271	1.079	1.103	0.446	1.261	0.882	0.48	0.611	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11824	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KRFFAVGPPGTKATYKRTK	6-27	0.980	—	—	—	—	0.000	—	—	0.095	0.941	0.004	0.210	0.056	0.029	0.032	0.006	0.050	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010793	1.000	1.000	Hsc_gene_19352.t1	Hsc_gene_19352.t1	—	P85834.1 Elongation factor Tu, mitochondrial [Rattus norvegicus]	BAF31895.1 mitochondrial elongation factor Tu1 precursor [Globodera rostochiensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.876\|GO:0110165_0.843\|GO:0005622_0.750\|GO:0003674_0.693\|GO:0005737_0.685\|GO:0008150_0.657\|GO:0016020_0.648\|GO:0005488_0.592\|GO:0043226_0.550\|GO:0043229_0.531	IPR000795+34-226_34-231_38-51_82-90_102-112_118-129_157-166+\|IPR004160+330-417+\|IPR004161+252-320+\|IPR009000+234-324+\|IPR009001+330-423+\|IPR027417+26-231_34-240+\|IPR031157+75-90+\|IPR033720+240-324+\|IPR041709+35-231+\|IPR050055+27-426+	—	PF00009+34-226+Elongation_factor_Tu_GTP_binding_domain\|PF03143+330-417+Elongation_factor_Tu_C-terminal_domain\|PF03144+252-320+Elongation_factor_Tu_domain_2	G3DSA:2.40.30.10:FF:000001+234-362+Elongation_factor_Tu\|G3DSA:3.40.50.300:FF:000003+25-231+Elongation_factor_Tu	PTHR43721+27-426+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	462-481	1.000	1-461	5i4r_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.639	53738.650	7.756	7.000	29.730	9.771	47.817	52.183	16.216	13.514	48.025

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	red	5175.013	3870.531	4495.160	7257.389	9197.180	7283.552	7201.076	3549.997	2314.590	4834.157	3754.343

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.770	0.799	0.310	-0.321	—	-1.143	1.164	—	1.809	—	—	—

No JSON data available for plots.

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