Hg_chrom6_TN10mRNA_12556
Organism: Heterodera glycines Gene Locus: chr6:7202542-7205949 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.261 | 1.498 | 0.863 | 0.468 | 1.017 | 0.782 | 0.928 | 1.864 | 1.055 | 1.145 | 0.565 | 1.595 | 1.224 | 0.717 | 1.176 | 1.017 | 0.834 | 1.079 | 0.522 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.601
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — |
11-32
|
0.920
|
— | — | — | — |
0.000
|
— | — |
0.380
|
0.475
|
0.023
|
0.551
|
0.120
|
0.252
|
0.177
|
0.294
|
0.125
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010794
|
1.000
|
1.000
|
Hsc_gene_19353.t1
|
Hsc_gene_19353.t1
|
— |
A4IHW6.1 Glucosamine-6-phosphate isomerase 2 [Xenopus tropicalis]
|
XP_018020418.1 glucosamine-6-phosphate isomerase 2-like isoform X1 [Hyalella azteca]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004342|GO:0005975|GO:0006044
|
GO:0008150_0.737|GO:0005575_0.706|GO:0110165_0.685|GO:0003674_0.639|GO:0005622_0.607|GO:0005737_0.584|GO:0003824_0.549|GO:0008152_0.528
|
IPR004547+1-259_1-268_1-272_10-259+|IPR006148+17-249+|IPR018321+137-155+|IPR037171+1-274+
|
— |
PF01182+17-249+Glucosamine-6-phosphate_isomerases/6-phosphogluconolactonase
|
— |
PTHR11280+1-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
295-295
|
1.000
|
1-294
|
1ne7_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
32233.410
|
6.718
|
1.500
|
24.068
|
11.186
|
45.763
|
54.237
|
13.220
|
10.847
|
54.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
114.445
|
80.871
|
126.139
|
67.188
|
117.779
|
146.442
|
189.940
|
79.039
|
33.151
|
173.058
|
113.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.413
|
-0.405
|
-0.800
|
0.779
|
— |
0.385
|
-1.003
|
1.410
|
— | — | — | — | — |
No JSON data available for plots.