Hg_chrom6_TN10mRNA_12557
Organism: Heterodera glycines Gene Locus: chr6:7210744-7216379 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.856 | 0.669 | 1.194 | 0.974 | 1.332 | 0.902 | 1.732 | 1.154 | 1.053 | 0.459 | 1.146 | 1.563 | 1.249 | 1.811 | 0.989 | 0.781 | 0.787 | 1.166 | 1.21 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11826
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRHR,RHRR
|
20-61
|
0.895
|
42-62
|
0.998
|
— | — |
0.000
|
— | — |
0.116
|
0.081
|
0.079
|
0.174
|
0.174
|
0.241
|
0.281
|
0.008
|
0.293
|
0.786
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010795
|
1.000
|
1.000
|
Hsc_gene_19354.t1
|
Hsc_gene_19354.t1
|
— |
Q22710.4 Zinc metalloproteinase nas-26 [Caenorhabditis elegans]
|
KAI1731780.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.799|GO:0005575_0.622|GO:0110165_0.617|GO:0003674_0.614|GO:0032501_0.573
|
IPR000859+355-449_355-457_355-460+|IPR001506+105-307_114-306_134-152_189-207_208-225_293-306+|IPR006026+110-259+|IPR017050+78-461+|IPR024079+85-309+|IPR034035+116-305+|IPR035914+349-461_351-452+
|
SM00042+355-460+|SM00235+110-259+
|
PF00431+355-449+CUB_domain|PF01400+114-306+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+95-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-462
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
52867.230
|
8.655
|
19.000
|
24.892
|
14.719
|
45.455
|
54.545
|
15.368
|
9.524
|
47.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
751.598
|
429.714
|
70.252
|
70.975
|
683.232
|
4815.820
|
227.790
|
1175.182
|
15.600
|
474.180
|
277.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.844
|
-2.735
|
— |
3.237
|
2.832
|
-4.391
|
-2.155
|
-2.218
|
-5.068
|
— | — | — | — |
No JSON data available for plots.