Hg_chrom6_TN10mRNA_12559
Organism: Heterodera glycines Gene Locus: chr6:7222728-7234629 Feature type: polypeptideProtein Sequence
Length: 2,003
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 1.091 | 1.044 | 0.775 | 0.974 | 1.306 | 0.654 | 1.073 | 1.287 | 1.444 | 0.719 | 1.703 | 1.317 | 0.538 | 1.447 | 0.927 | 0.843 | 0.862 | 0.806 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11828
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRCLEIFELAKKKARS
|
30-55
|
0.964
|
— | — | — | — |
0.000
|
— | — |
0.498
|
0.205
|
0.013
|
0.480
|
0.145
|
0.342
|
0.230
|
0.020
|
0.230
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002343
|
1.000
|
3.000
|
Hsc_gene_19356.t1;Hsc_gene_7746.t1;Hsc_gene_7747.t1
|
Hsc_gene_19356.t1;Hsc_gene_19357.t1;Hsc_gene_19357.t2
|
— |
Q13535.3 Serine/threonine-protein kinase ATR [Homo sapiens]
|
KAI1731754.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016301
|
GO:0008150_0.936|GO:0009987_0.864|GO:0005575_0.839|GO:0110165_0.831|GO:0003674_0.734|GO:0008152_0.720|GO:0065007_0.720|GO:0050789_0.714|GO:0005622_0.697|GO:0050896_0.689|GO:0044238_0.674|GO:0050794_0.673|GO:0071840_0.656|GO:0016043_0.645|GO:0043170_0.640|GO:0051716_0.639|GO:0044237_0.633|GO:0003824_0.626|GO:0016020_0.580|GO:0009058_0.559|GO:0043226_0.557|GO:0005737_0.555|GO:0007154_0.551|GO:0023052_0.551|GO:0006139_0.549|GO:0006996_0.548|GO:0006950_0.542|GO:0043229_0.541|GO:0016740_0.529|GO:0019222_0.522|GO:0007165_0.520|GO:0044249_0.518|GO:0090304_0.512|GO:0009059_0.504
|
IPR000403+1650-1958_1676-1918_1677-1992+|IPR003151+1032-1345+|IPR003152+1971-2003_1972-2002+|IPR011009+1645-1926+|IPR018936+1812-1832+|IPR036940+1776-1962+|IPR050517+153-2002+
|
SM00146+1677-1992+|SM01343+1971-2003+
|
PF00454+1676-1918+Phosphatidylinositol_3-_and_4-kinase|PF02259+1032-1345+FAT_domain|PF02260+1972-2002+FATC_domain
|
— |
PTHR11139+153-2002+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
920-963
|
2.000
|
1-919;964-2003
|
6syt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
225255.300
|
7.730
|
26.500
|
25.562
|
10.135
|
46.980
|
53.020
|
13.979
|
11.583
|
47.728
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
2194.403
|
3719.738
|
1706.041
|
2111.381
|
2689.191
|
1978.204
|
3138.650
|
1240.426
|
951.720
|
2667.860
|
1932.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.354
|
-0.954
|
0.416
|
0.318
|
-0.429
|
0.677
|
-0.781
|
1.483
|
— | — | — | — | — |
No JSON data available for plots.