Hg_chrom6_TN10mRNA_12560
Organism: Heterodera glycines Gene Locus: chr6:7235624-7246547 Feature type: polypeptideProtein Sequence
Length: 1,522
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.36 | 1.147 | 1.065 | 1.226 | 1.078 | 0.688 | 1.117 | 1.299 | 1.021 | 0.786 | 1.623 | 1.351 | 0.935 | 1.18 | 0.873 | 0.851 | 0.996 | 0.859 | 1.044 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11829
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RKKR,RKFLGYQIFYKKVEK
|
— | — | — | — |
1-23
|
0.996
|
0.983
|
1.000
|
1.000
|
0.140
|
0.064
|
0.014
|
0.280
|
0.223
|
0.552
|
0.449
|
0.040
|
0.825
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004434
|
2.000
|
1.000
|
Hsc_gene_19358.t1
|
Hsc_gene_19358.t1
|
— |
Q968Y9.2 Insulin-like receptor [Caenorhabditis elegans]
|
KAH7731618.1 insulin-like growth factor 1 receptor [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005515|GO:0005524|GO:0006468
|
GO:0008150_0.966|GO:0009987_0.935|GO:0050896_0.884|GO:0051716_0.858|GO:0003674_0.846|GO:0005575_0.833|GO:0065007_0.829|GO:0050789_0.815|GO:0003824_0.808|GO:0140096_0.808|GO:0110165_0.796|GO:0050794_0.791|GO:0016740_0.783|GO:0007154_0.770|GO:0023052_0.769|GO:0071944_0.738|GO:0008152_0.735|GO:0043170_0.730|GO:0005886_0.720|GO:0016020_0.720|GO:0044237_0.715|GO:0044238_0.711|GO:0005488_0.686|GO:0032501_0.686|GO:0005515_0.681|GO:0016772_0.678|GO:0007165_0.675|GO:0032502_0.667|GO:0019538_0.663|GO:0048856_0.661|GO:0016773_0.658|GO:0016301_0.649|GO:0004672_0.646|GO:0048518_0.623|GO:0007275_0.601|GO:0007166_0.600|GO:0048522_0.599|GO:0005622_0.594|GO:0071840_0.593|GO:0016043_0.588|GO:0036211_0.581|GO:0043412_0.581|GO:0060089_0.558|GO:0038023_0.547|GO:0006793_0.546|GO:0042221_0.545|GO:0006796_0.537|GO:0004888_0.535|GO:0048731_0.534|GO:0023051_0.514|GO:0010646_0.509|GO:0048583_0.508|GO:0007167_0.507|GO:0006468_0.506|GO:0016310_0.506
|
IPR000494+57-168_356-465+|IPR000719+1144-1417+|IPR001245+1145-1415_1226-1239_1273-1291_1322-1332_1341-1363_1386-1408+|IPR003961+497-623_641-678_641-943_970-1066_971-1057+|IPR006211+184-340+|IPR006212+225-274+|IPR008266+1279-1291+|IPR009030+235-343+|IPR011009+1117-1415+|IPR013783+505-636_644-817_849-960_970-1065+|IPR017441+1150-1180+|IPR017896+320-350+|IPR020635+1144-1415+|IPR036116+499-680_916-1050+|IPR036941+24-263_337-504+|IPR050122+714-1415+
|
SM00060+497-623_641-943_971-1057+|SM00219+1144-1415+|SM00261+225-274+
|
PF00757+184-340+Furin-like_cysteine_rich_region|PF01030+57-168_356-465+Receptor_L_domain|PF07714+1145-1415+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:1.10.510.10:FF:000987+1229-1438+Receptor_protein-tyrosine_kinase
|
PTHR24416+714-1415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
779-876;1469-1522
|
2.000
|
1-778;877-1468
|
8pyn_AAA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
173187.410
|
5.349
|
-24.000
|
26.873
|
11.761
|
48.226
|
51.774
|
13.206
|
13.666
|
49.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
948.457
|
1308.017
|
1365.168
|
858.212
|
871.023
|
866.352
|
1369.284
|
1387.534
|
980.393
|
404.608
|
651.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.168
|
-0.745
|
-0.561
|
— | — |
0.671
|
0.578
|
— | — | — | — | — | — |