Hg_chrom6_TN10mRNA_12562
Organism: Heterodera glycines Gene Locus: chr6:7270369-7274266 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.052 | 1.315 | 0.905 | 0.702 | 1.32 | 1.102 | 0.835 | 1.018 | 1.006 | 1.223 | 0.583 | 1.331 | 0.88 | 0.653 | 1.524 | 1.131 | 1.224 | 0.754 | 1.218 | 0.399 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11831
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.238
|
0.036
|
0.484
|
0.257
|
0.210
|
0.400
|
0.127
|
0.160
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004432
|
3.000
|
0.000
|
0.000
|
Hsc_gene_19361.t1
|
— |
A8XSV3.1 Putative neurobeachin homolog [Caenorhabditis briggsae]
|
KAH7731827.1 LPS-responsive vesicle traffickingbeach and anchor containing isoform 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0005575_0.902|GO:0110165_0.896|GO:0009987_0.886|GO:0005622_0.704|GO:0016020_0.662|GO:0005737_0.630|GO:0016043_0.630|GO:0071840_0.630|GO:0051179_0.620|GO:0065007_0.584|GO:0051641_0.579|GO:0003674_0.568|GO:0050896_0.565|GO:0050789_0.564|GO:0050794_0.552|GO:0032501_0.537
|
IPR031570+176-317+|IPR050865+218-372+
|
— |
PF15787+176-317+Neurobeachin/BDCP,_DUF4704_alpha_solenoid_region
|
— |
PTHR13743+218-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-155
|
1.000
|
156-442
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
48929.900
|
6.073
|
-2.500
|
26.244
|
8.145
|
51.584
|
48.416
|
13.348
|
12.896
|
52.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
182.692
|
130.542
|
151.645
|
142.879
|
147.072
|
121.788
|
200.545
|
65.834
|
196.489
|
291.795
|
250.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.731
|
-0.993
|
1.750
|
— | — | — | — | — |
No JSON data available for plots.