Hg_chrom6_TN10mRNA_12565
Organism: Heterodera glycines Gene Locus: chr6:7291134-7292137 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.669 | 1.308 | 0.992 | 1.319 | 0.738 | 1.028 | 1.799 | 0.959 | 1.944 | 0.436 | 1.693 | 1.399 | 0.968 | 1.909 | 0.719 | 0.118 | 0.436 | 1.66 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11834
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
22-42
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.684
|
0.350
|
0.011
|
0.550
|
0.106
|
0.229
|
0.233
|
0.123
|
0.147
|
0.346
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004435
|
2.000
|
1.000
|
Hsc_gene_10550.t1
|
Hsc_gene_10550.t1
|
— | — |
KAI1731663.1 E3 ubiquitin-protein ligase HECW1 [Ditylenchus destructor]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0005575_0.868|GO:0110165_0.861|GO:0009987_0.848|GO:0065007_0.815|GO:0050789_0.807|GO:0050794_0.789|GO:0005622_0.772
|
IPR032348+42-136+
|
— |
PF16562+42-136+N-terminal_domain_of_E3_ubiquitin-protein_ligase_HECW1_and_2
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
15927.230
|
5.990
|
-1.500
|
30.935
|
12.950
|
42.446
|
57.554
|
15.827
|
15.108
|
42.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
12.137
|
12.177
|
61.465
|
8.022
|
2.025
|
3.995
|
1.421
|
9.146
|
9.675
|
9.000
|
9.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.108
|
— |
-2.833
|
-2.031
|
— | — | — |
-2.547
|
— | — | — | — | — |
No JSON data available for plots.