SCN Proteipedia

Hg_chrom6_TN10mRNA_12567

Organism: Heterodera glycines Gene Locus: chr6:7296165-7304007 Feature type: polypeptide

Protein Sequence

Length: 1,096

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.828	0.934	1.111	0.849	1.156	1.053	0.771	1.597	0.791	1.48	0.525	1.342	1.115	0.842	1.974	1.316	0.553	0.733	1.544	0.537	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11836	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRSTAAQQQRDRKTRS,RRKRENENDCVGGRRERA,RKTRSAPPIRRKGTEARRKR	22-42	0.999	—	—	—	—	0.000	—	—	0.429	0.161	0.022	0.677	0.113	0.287	0.267	0.063	0.259	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004435	2.000	1.000	Hsc_gene_10550.t1	Hsc_gene_10550.t1	—	Q9P2P5.2 E3 ubiquitin-protein ligase HECW2 [Homo sapiens]	KHN79903.1 E3 ubiquitin-protein ligase HECW2 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842\|GO:0005515	GO:0008150_0.946\|GO:0005575_0.870\|GO:0110165_0.870\|GO:0009987_0.843\|GO:0065007_0.818\|GO:0050789_0.804\|GO:0005622_0.773\|GO:0003674_0.716\|GO:0050794_0.712\|GO:0008152_0.610\|GO:0044238_0.606\|GO:0016020_0.605\|GO:0043170_0.602\|GO:0005737_0.587\|GO:0043226_0.569\|GO:0050896_0.569\|GO:0003824_0.549\|GO:0048519_0.543\|GO:0019538_0.535\|GO:0140096_0.534\|GO:0043229_0.528\|GO:0032501_0.510\|GO:0016740_0.503	IPR000569+723-1093_742-1096_744-1096_775-1094+\|IPR001202+328-361_329-361_330-359_331-359_502-537_503-537+\|IPR035983+720-1090+\|IPR036020+324-362_495-536+\|IPR040524+435-498+\|IPR050409+289-1093+	SM00119+742-1096+\|SM00456+329-361_503-537+	PF00397+330-359+WW_domain\|PF00632+775-1094+HECT-domain_(ubiquitin-transferase)\|PF18436+435-498+Helical_box_domain_of_E3_ubiquitin-protein_ligase_HECW1	G3DSA:3.30.2410.10:FF:000001+978-1096+E3_ubiquitin-protein_ligase_NEDD4-like	PTHR11254+289-1093+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-8;342-435;538-613	3.000	9-341;436-537;614-1096	4bbn_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.758	124493.740	7.596	18.500	29.380	11.040	50.091	49.909	16.332	13.047	47.993

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	550.839	747.322	2784.964	620.824	172.156	120.825	131.063	831.318	139.431	277.168	218.138

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.669	-0.405	-2.057	-1.883	-0.495	—	2.679	-2.525	—	—	—	—	—

No JSON data available for plots.

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