Hg_chrom6_TN10mRNA_12568
Organism: Heterodera glycines Gene Locus: chr6:7304656-7309143 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.632 | 1.186 | 1.187 | 0.543 | 1.626 | 0.755 | 1.993 | 0.845 | 1.273 | 0.467 | 1.066 | 1.157 | 1.185 | 1.442 | 1.475 | 0.861 | 0.988 | 0.139 | 0.373 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11837
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.752
|
0.440
|
0.000
|
— |
0.252
|
0.303
|
0.193
|
0.345
|
0.523
|
0.197
|
0.195
|
0.180
|
0.246
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002344
|
2.000
|
2.000
|
Hsc_gene_10549.t1;Hsc_gene_10549.t2
|
Hsc_gene_10549.t1
|
— |
Q9ULK6.2 RING finger protein 150 [Homo sapiens]
|
KAH7731839.1 Goliath protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.866|GO:0005575_0.709|GO:0110165_0.708|GO:0009987_0.682|GO:0065007_0.591|GO:0050789_0.583|GO:0003674_0.567|GO:0016020_0.560|GO:0050794_0.535|GO:0005622_0.533
|
IPR001841+267-309_268-308_268-309+|IPR013083+231-314+
|
SM00184+268-308+
|
PF13639+267-309+Ring_finger_domain
|
G3DSA:3.30.40.10:FF:000009+229-314+E3_ubiquitin-protein_ligase_RNF130
|
PTHR46539+234-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
329-552
|
1.000
|
1-328
|
5zc4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
60247.190
|
7.707
|
13.000
|
23.913
|
9.601
|
48.551
|
51.449
|
14.130
|
9.783
|
55.616
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
211.400
|
505.228
|
625.652
|
229.945
|
74.933
|
59.694
|
48.258
|
356.393
|
29.616
|
190.124
|
121.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.273
|
-1.336
|
-1.650
|
— | — |
2.481
|
-2.747
|
— | — | — | — | — |