Hg_chrom6_TN10mRNA_12569
Organism: Heterodera glycines Gene Locus: chr6:7332696-7338405 Feature type: polypeptideProtein Sequence
Length: 611
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.99 | 0.803 | 0.847 | 1.009 | 1.133 | 1.033 | 1.227 | 1.2 | 1.261 | 0.471 | 1.925 | 1.137 | 0.85 | 1.503 | 0.959 | 0.859 | 1.19 | 1.133 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11838
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.358
|
0.012
|
0.345
|
0.152
|
0.130
|
0.098
|
0.884
|
0.098
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002345
|
3.000
|
1.000
|
Hsc_gene_5494.t1
|
Hsc_gene_5494.t1
|
— |
O45218.1 Alkyldihydroxyacetonephosphate synthase [Caenorhabditis elegans]
|
KAI1731782.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0008609|GO:0008610|GO:0050660|GO:0071949
|
GO:0005575_0.814|GO:0110165_0.802|GO:0016020_0.709|GO:0005622_0.693|GO:0005737_0.662|GO:0003674_0.648|GO:0008150_0.627|GO:0043226_0.625|GO:0043229_0.613|GO:0043227_0.606|GO:0043231_0.600|GO:0003824_0.532
|
IPR004113+329-597+|IPR006094+147-288+|IPR016164+332-598+|IPR016166+142-324+|IPR016167+96-203+|IPR016169+204-323+|IPR016171+559-598+|IPR025650+25-598+|IPR036318+122-325+
|
— |
PF01565+147-288+FAD_binding_domain|PF02913+329-597+FAD_linked_oxidases,_C-terminal_domain
|
— |
PTHR46568+25-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;593-611
|
1.000
|
19-592
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
67876.820
|
7.419
|
7.500
|
23.404
|
10.147
|
44.026
|
55.974
|
12.930
|
10.475
|
50.900
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
lightgreen
|
215.401
|
98.594
|
175.518
|
152.203
|
255.068
|
323.545
|
435.294
|
282.288
|
73.519
|
241.300
|
169.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
0.489
|
— |
0.712
|
0.358
|
0.440
|
— |
0.770
|
— | — | — | — | — |
No JSON data available for plots.