Hg_chrom6_TN10mRNA_12572
Organism: Heterodera glycines Gene Locus: chr6:7358767-7360282 Feature type: polypeptideProtein Sequence
Length: 149
(Signal peptide: 1-51)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.405 | 0.312 | 0.366 | 0.926 | 1.007 | 1.721 | 0.959 | 1.342 | 0.447 | 1.905 | 0.712 | 1.579 | 1.305 | 0.903 | 1.37 | 1.726 | 0.0 | 0.712 | 0.0 | 0.592 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11840
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.813
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
REKRKHEYLRFGKRKHEYLRFGRK
|
— | — | — | — |
1-51
|
0.541
|
0.908
|
0.000
|
0.000
|
0.413
|
0.382
|
0.116
|
0.211
|
0.169
|
0.015
|
0.047
|
0.009
|
0.043
|
0.863
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004437
|
2.000
|
1.000
|
Hsc_gene_5480.t1
|
Hsc_gene_5480.t1
|
— |
Q9XWV7.2 FMRFamide-like neuropeptides 14 [Caenorhabditis elegans]
|
AAO92291.1 FMRFamide-related peptide precursor [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007218
|
— |
IPR002544+129-138_140-148+
|
— |
PF01581+129-138_140-148+FMRFamide_related_peptide_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
16120.600
|
9.275
|
7.000
|
22.148
|
9.396
|
42.282
|
57.718
|
14.094
|
8.054
|
47.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
650.614
|
501.899
|
3175.285
|
713.889
|
99.625
|
140.389
|
6.096
|
2450.259
|
123.917
|
95.706
|
107.796
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.434
|
0.371
|
-2.046
|
-2.875
|
0.511
|
-4.514
|
4.027
|
-8.509
|
— | — | — | — | — |