Hg_chrom6_TN10mRNA_12574
Organism: Heterodera glycines Gene Locus: chr6:7364095-7366497 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.631 | 1.004 | 0.327 | 0.496 | 0.6 | 1.752 | 0.385 | 1.799 | 1.039 | 1.75 | 0.382 | 1.693 | 1.898 | 0.899 | 1.248 | 0.771 | 0.767 | 1.09 | 0.553 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11842
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
79-100
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.277
|
0.247
|
0.008
|
0.198
|
0.556
|
0.080
|
0.331
|
0.043
|
0.143
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010798
|
1.000
|
1.000
|
Hsc_gene_5482.t1
|
Hsc_gene_5482.t1
|
— |
Q9XWV0.1 Transmembrane protein 33 homolog [Caenorhabditis elegans]
|
KAI1725298.1 transmembrane protein 33 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.908|GO:0110165_0.905|GO:0016020_0.859|GO:0005886_0.835|GO:0071944_0.835|GO:0005622_0.783|GO:0005737_0.774|GO:0043226_0.740|GO:0043229_0.731|GO:0043227_0.712|GO:0043231_0.702|GO:0005773_0.675|GO:0012505_0.655|GO:0008150_0.613|GO:0009987_0.572
|
IPR005344+37-269+|IPR051645+14-265+
|
— |
PF03661+37-269+Transmembrane_protein_33/Nucleoporin_POM33
|
— |
PTHR12703+14-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36
|
1.000
|
37-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
31081.330
|
10.003
|
14.000
|
17.626
|
13.669
|
38.849
|
61.151
|
12.230
|
5.396
|
46.763
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
940.542
|
1094.978
|
1241.825
|
1257.648
|
1418.081
|
1293.971
|
1898.615
|
818.146
|
514.650
|
345.158
|
417.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.127
|
0.141
|
— |
0.563
|
-0.762
|
1.354
|
— | — | — | — | — |
No JSON data available for plots.