Hg_chrom6_TN10mRNA_12576
Organism: Heterodera glycines Gene Locus: chr6:7370657-7372645 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.44 | 1.081 | 0.839 | 0.901 | 0.693 | 0.837 | 1.081 | 0.541 | 1.424 | 0.737 | 1.431 | 1.276 | 1.247 | 1.765 | 1.042 | 0.93 | 1.269 | 0.832 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11844
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRDVVAKQSDVNLIRMKKQ
|
— | — |
15-44
|
0.978
|
— | — |
0.000
|
— | — |
0.076
|
0.931
|
0.332
|
0.448
|
0.076
|
0.088
|
0.187
|
0.071
|
0.026
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001369
|
3.000
|
2.000
|
Hsc_gene_19346.t1;Hsc_gene_19348.t1
|
Hsc_gene_19346.t1;Hsc_gene_19348.t1
|
— |
A8PF69.1 Lipoyl synthase, mitochondrial [Brugia malayi]
|
KAI6235391.1 Lipoyl synthase, mitochondrial [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539
|
GO:0005575_0.845|GO:0110165_0.843|GO:0005622_0.758|GO:0016020_0.756|GO:0043226_0.704|GO:0043229_0.690|GO:0005737_0.689|GO:0043227_0.673|GO:0043231_0.656
|
IPR003698+32-370_63-369_67-368_73-368_78-370+|IPR006638+133-342+|IPR007197+67-368_129-347_139-302+|IPR013785+131-334+|IPR031691+35-117+
|
SM00729+133-342+
|
PF04055+139-302+Radical_SAM_superfamily|PF16881+35-117+N-terminal_domain_of_lipoyl_synthase_of_Radical_SAM_family
|
G3DSA:3.20.20.70:FF:000036+129-336+Lipoyl_synthase,_mitochondrial
|
PTHR10949+63-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-370
|
9c19_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
40854.040
|
8.919
|
12.000
|
27.027
|
9.189
|
44.595
|
55.405
|
15.676
|
11.351
|
53.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
68.039
|
14.445
|
9.417
|
14.716
|
15.844
|
35.921
|
553.865
|
31.945
|
29.716
|
21.828
|
25.208
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.847
|
— |
0.752
|
— |
1.195
|
3.955
|
— |
4.256
|
— | — | — | — | — |
No JSON data available for plots.