SCN Proteipedia

Hg_chrom6_TN10mRNA_12577

Organism: Heterodera glycines Gene Locus: chr6:7372905-7376939 Feature type: polypeptide

Protein Sequence

Length: 392

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.157	0.831	0.881	0.528	1.19	0.916	0.668	1.148	1.361	1.103	0.657	0.75	1.701	0.932	1.197	0.875	1.129	1.469	0.785	0.3	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11845	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.729

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.451	0.227	0.018	0.553	0.164	0.332	0.317	0.033	0.167	0.168

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010799	1.000	1.000	Hsc_gene_19347.t1	Hsc_gene_19347.t1;Hsc_gene_19347.t2;Hsc_gene_19347.t3;Hsc_gene_19347.t4	—	—	KAH7731644.1 Reduced growth phenotype protein 1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.930\|GO:0005575_0.887\|GO:0110165_0.885\|GO:0003674_0.859\|GO:0009987_0.858\|GO:0005622_0.798\|GO:0016020_0.796\|GO:0008152_0.786\|GO:0005737_0.780\|GO:0065007_0.771\|GO:0005488_0.759\|GO:0044238_0.758\|GO:0050789_0.757\|GO:0003824_0.748\|GO:0043226_0.738\|GO:0051179_0.736\|GO:0006810_0.732\|GO:0051234_0.732\|GO:0071944_0.732\|GO:0005515_0.730\|GO:0043170_0.725\|GO:0019538_0.712\|GO:0043229_0.711\|GO:0043227_0.705\|GO:0005886_0.704\|GO:0048519_0.704\|GO:0019222_0.702\|GO:0009056_0.701\|GO:0051641_0.695\|GO:0060255_0.694\|GO:0080090_0.693\|GO:0016787_0.692\|GO:0043231_0.691\|GO:0051649_0.687\|GO:0009057_0.684\|GO:0009892_0.682\|GO:0051246_0.681\|GO:0046907_0.680\|GO:0010605_0.679\|GO:0016192_0.679\|GO:0065009_0.679\|GO:0009894_0.677\|GO:0050790_0.677\|GO:0030163_0.676\|GO:0042176_0.674\|GO:0051248_0.674\|GO:0003924_0.670\|GO:0005829_0.670\|GO:0009895_0.670\|GO:0016197_0.670\|GO:0016462_0.670\|GO:0016482_0.670\|GO:0016817_0.670\|GO:0016818_0.670\|GO:0017111_0.670\|GO:0042147_0.670\|GO:0042177_0.670\|GO:0043085_0.670\|GO:0043087_0.670\|GO:0043547_0.670\|GO:0044093_0.670\|GO:0051336_0.670\|GO:0051345_0.670\|GO:0019899_0.667\|GO:0098772_0.661\|GO:0030234_0.657\|GO:0005085_0.650\|GO:0030695_0.650\|GO:0031267_0.650\|GO:0051020_0.650\|GO:0060589_0.650\|GO:0032991_0.615\|GO:0005773_0.608\|GO:0012505_0.587\|GO:0031090_0.581\|GO:0005794_0.553\|GO:0031984_0.553\|GO:0140535_0.549\|GO:0005802_0.546\|GO:0098791_0.546\|GO:0032045_0.540\|GO:0032588_0.540\|GO:0034066_0.540	IPR014848+13-158_47-158_203-330+	—	PF08737+47-158_203-330+Rgp1	—	PTHR12507+13-158+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-392	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.498	43217.460	6.057	-2.500	24.490	10.459	44.643	55.357	12.500	11.990	53.061

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	tan	467.425	350.985	524.063	454.340	489.262	625.282	879.649	417.901	624.056	173.888	366.817

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.349	0.235	—	—	0.369	0.503	-0.689	1.218	—	—	—	—	—

No JSON data available for plots.

Back to Browser