SCN Proteipedia

Hg_chrom6_TN10mRNA_12579

Organism: Heterodera glycines Gene Locus: chr6:7378988-7384023 Feature type: polypeptide

Protein Sequence

Length: 826

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.971	0.845	1.167	0.501	1.473	1.273	0.836	1.271	1.211	0.802	1.064	1.424	1.043	0.908	1.235	0.726	0.913	1.156	0.652	0.677	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11847	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.647

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRS,RKVAKGEESGRRHAK,VAKGEESGRRHAKSSDRNGGRQRQDGKKIKR	—	—	—	—	—	—	0.000	—	—	0.758	0.145	0.016	0.434	0.098	0.020	0.063	0.032	0.065	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010800	1.000	1.000	Hsc_gene_19345.t1	Hsc_gene_19345.t1;Hsc_gene_19345.t2	—	Q5F485.1 ATP-dependent RNA helicase DDX42 [Gallus gallus]	KAH7731642.1 ATP-dependent RNA helicase DDX42 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.823\|GO:0110165_0.816\|GO:0005622_0.749\|GO:0003674_0.731\|GO:0008150_0.730\|GO:0016020_0.694\|GO:0009987_0.689\|GO:0043226_0.655\|GO:0043229_0.628\|GO:0005488_0.609\|GO:0043227_0.587\|GO:0043231_0.562\|GO:0008152_0.548\|GO:0044238_0.545\|GO:0044237_0.536\|GO:0043170_0.531\|GO:0009058_0.530\|GO:0005737_0.512\|GO:0044249_0.511\|GO:0009059_0.508	IPR001650+488-594_490-633_514-594+\|IPR011545+279-449+\|IPR014001+274-476_286-461+\|IPR014014+255-283+\|IPR027417+217-464_327-611_467-637+\|IPR050079+256-794+	SM00487+274-476+\|SM00490+514-594+	PF00270+279-449+DEAD/DEAH_box_helicase\|PF00271+488-594+Helicase_conserved_C-terminal_domain	G3DSA:3.40.50.300:FF:000079+217-464+probable_ATP-dependent_RNA_helicase_DDX17	PTHR47959+256-794+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-177;668-826	1.000	178-667	8dpe_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.516	92362.330	5.934	-7.500	30.872	9.443	50.121	49.879	15.617	15.254	49.879

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1800.919	3518.949	2057.332	1613.987	1733.213	1921.436	2231.124	1592.648	2073.130	823.413	1359.006

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.004	-1.262	-0.241	—	0.163	0.227	-0.375	0.629	—	—	—	—	—

No JSON data available for plots.

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