Hg_chrom6_TN10mRNA_12581
Organism: Heterodera glycines Gene Locus: chr6:7392928-7395139 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.082 | 1.374 | 0.2 | 0.969 | 1.64 | 0.415 | 1.017 | 1.292 | 1.532 | 1.013 | 1.881 | 1.05 | 0.28 | 1.009 | 1.287 | 1.096 | 1.057 | 0.224 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11849
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.047
|
0.007
|
0.191
|
0.530
|
0.657
|
0.726
|
0.034
|
0.419
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010802
|
1.000
|
1.000
|
Hsc_gene_19343.t1
|
Hsc_gene_19343.t1
|
— |
O14662.3 Syntaxin-16 [Homo sapiens]
|
QQL93556.1 SNARE1 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005484|GO:0006886|GO:0016020|GO:0016192
|
GO:0005575_0.950|GO:0110165_0.949|GO:0016020_0.901|GO:0071944_0.844|GO:0008150_0.839|GO:0005886_0.830|GO:0009987_0.794|GO:0005622_0.793|GO:0005737_0.710|GO:0051179_0.702|GO:0043226_0.698|GO:0043229_0.677|GO:0043227_0.659|GO:0051234_0.649|GO:0043231_0.642|GO:0071840_0.630|GO:0016043_0.624|GO:0006810_0.622|GO:0051641_0.582|GO:0005773_0.571|GO:0065007_0.558|GO:0012505_0.537|GO:0003674_0.532|GO:0050789_0.524|GO:0061024_0.503
|
IPR000727+245-312_250-312_286-337+|IPR006012+256-295+|IPR010989+65-305+|IPR045242+90-328+
|
SM00397+245-312+
|
PF05739+286-337+SNARE_domain
|
— |
PTHR19957+90-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-344
|
1hvv_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
38442.790
|
5.935
|
-2.500
|
27.035
|
7.267
|
53.779
|
46.221
|
13.663
|
13.372
|
48.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
954.345
|
2247.893
|
776.925
|
561.194
|
792.292
|
772.601
|
2142.247
|
849.961
|
502.787
|
744.501
|
640.909
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.763
|
-2.139
|
-0.360
|
0.466
|
— |
1.482
|
— |
1.478
|
— | — | — | — | — |
No JSON data available for plots.