Hg_chrom6_TN10mRNA_12582
Organism: Heterodera glycines Gene Locus: chr6:7395324-7396849 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.746 | 0.972 | 0.738 | 1.604 | 1.097 | 0.891 | 0.802 | 1.426 | 1.445 | 0.891 | 2.831 | 1.04 | 0.823 | 0.655 | 1.07 | 0.614 | 1.215 | 0.0 | 0.472 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11850
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.419
|
0.185
|
0.009
|
0.576
|
0.126
|
0.164
|
0.222
|
0.002
|
0.099
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010803
|
1.000
|
1.000
|
Hsc_gene_19342.t1
|
Hsc_gene_19342.t1
|
— |
O43617.1 Trafficking protein particle complex subunit 3 [Homo sapiens]
|
KAH7731626.1 trappc3-prov protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030008|GO:0048193
|
GO:0005575_0.797|GO:0110165_0.711|GO:0008150_0.703|GO:0009987_0.643|GO:0005622_0.636|GO:0005737_0.633|GO:0016020_0.622|GO:0043226_0.560|GO:0043229_0.548|GO:0043227_0.530|GO:0043231_0.510
|
IPR007194+29-169+|IPR016721+3-186_17-185_23-172+|IPR024096+22-172+
|
— |
PF04051+29-169+Transport_protein_particle_(TRAPP)_component
|
— |
PTHR13048+17-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;187-187
|
1.000
|
12-186
|
1sz7_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
20537.690
|
4.439
|
-9.500
|
25.668
|
6.952
|
44.385
|
55.615
|
10.695
|
14.973
|
48.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
781.860
|
893.524
|
508.550
|
601.571
|
698.418
|
750.291
|
778.604
|
620.655
|
149.546
|
1489.124
|
915.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.042
|
-0.708
|
0.351
|
0.184
|
— | — |
-0.377
|
0.469
|
-3.441
|
— | — | — | — |
No JSON data available for plots.