Hg_chrom6_TN10mRNA_12584
Organism: Heterodera glycines Gene Locus: chr6:7407646-7413839 Feature type: polypeptideProtein Sequence
Length: 614
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 0.985 | 0.8 | 0.842 | 1.004 | 1.169 | 1.028 | 1.303 | 1.194 | 1.233 | 0.469 | 1.916 | 1.131 | 0.846 | 1.562 | 0.954 | 0.828 | 1.16 | 1.128 | 0.623 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.640
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.365
|
0.010
|
0.346
|
0.142
|
0.129
|
0.086
|
0.875
|
0.090
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002345
|
3.000
|
1.000
|
Hsc_gene_5494.t1
|
Hsc_gene_5494.t1
|
— |
O45218.1 Alkyldihydroxyacetonephosphate synthase [Caenorhabditis elegans]
|
KAI1731782.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0008609|GO:0008610|GO:0050660|GO:0071949
|
GO:0005575_0.811|GO:0110165_0.799|GO:0016020_0.702|GO:0005622_0.697|GO:0005737_0.658|GO:0003674_0.647|GO:0008150_0.625|GO:0043226_0.624|GO:0043229_0.614|GO:0043227_0.604|GO:0043231_0.599|GO:0003824_0.534
|
IPR004113+332-600+|IPR006094+150-291+|IPR016164+335-601+|IPR016166+145-327+|IPR016167+99-206+|IPR016169+207-326+|IPR016171+562-601+|IPR025650+25-601+|IPR036318+125-328+
|
— |
PF01565+150-291+FAD_binding_domain|PF02913+332-600+FAD_linked_oxidases,_C-terminal_domain
|
— |
PTHR46568+25-601+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;596-614
|
1.000
|
19-595
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
68283.230
|
7.733
|
10.000
|
23.779
|
10.261
|
44.300
|
55.700
|
13.355
|
10.423
|
50.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
cyan
|
391.739
|
278.284
|
562.494
|
468.572
|
688.138
|
765.803
|
878.337
|
701.353
|
47.916
|
49.304
|
48.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
0.615
|
-0.155
|
0.523
|
— |
0.208
|
— |
0.468
|
— | — |
3.804
|
— | — |
No JSON data available for plots.