Hg_chrom6_TN10mRNA_12585
Organism: Heterodera glycines Gene Locus: chr6:7416301-7421246 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 0.896 | 0.857 | 1.772 | 0.642 | 0.878 | 0.918 | 1.285 | 0.714 | 1.592 | 0.357 | 1.26 | 1.071 | 0.906 | 1.573 | 1.315 | 1.018 | 1.136 | 0.659 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11853
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.042
|
0.134
|
0.003
|
0.212
|
0.625
|
0.511
|
0.789
|
0.001
|
0.368
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010805
|
1.000
|
1.000
|
Hsc_gene_5493.t1
|
Hsc_gene_5493.t1
|
— |
E7FBS9.1 Palmitoyltransferase ZDHHC5-B [Danio rerio]
|
KAI1731783.1 DHHC palmitoyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.883|GO:0005575_0.882|GO:0110165_0.882|GO:0016020_0.823|GO:0071944_0.801|GO:0005886_0.787|GO:0009987_0.761|GO:0005622_0.682|GO:0065007_0.650|GO:0043226_0.638|GO:0043229_0.617|GO:0003674_0.615|GO:0050789_0.588|GO:0005737_0.569|GO:0043227_0.567|GO:0043231_0.565|GO:0050794_0.535|GO:0032501_0.506
|
IPR001594+103-223+|IPR051108+62-251+
|
— |
PF01529+103-223+DHHC_palmitoyltransferase
|
— |
PTHR12349+62-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-467
|
1.000
|
1-305
|
9oa6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
51072.660
|
8.063
|
13.000
|
21.199
|
9.422
|
43.897
|
56.103
|
12.634
|
8.565
|
56.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
480.809
|
630.302
|
352.487
|
449.921
|
608.565
|
515.830
|
828.584
|
227.288
|
171.077
|
620.364
|
427.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.068
|
-0.624
|
0.461
|
0.404
|
-0.225
|
0.695
|
-1.282
|
2.007
|
— | — | — | — | — |
No JSON data available for plots.