Hg_chrom6_TN10mRNA_12586
Organism: Heterodera glycines Gene Locus: chr6:7421925-7430468 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.793 | 0.689 | 0.718 | 0.694 | 0.971 | 1.015 | 1.326 | 1.347 | 1.689 | 0.43 | 1.114 | 1.42 | 0.874 | 0.966 | 0.974 | 0.9 | 1.263 | 1.748 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11854
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KIKRRRKVRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.158
|
0.053
|
0.138
|
0.345
|
0.633
|
0.412
|
0.033
|
0.632
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010806
|
1.000
|
1.000
|
Hsc_gene_5491.t1
|
Hsc_gene_5491.t1;Hsc_gene_5492.t1
|
— |
P34579.2 Vesicular GABA transporter [Caenorhabditis elegans]
|
KAI6235442.1 Vesicular GABA transporter [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.907|GO:0016020_0.845|GO:0071944_0.720|GO:0005886_0.712|GO:0008150_0.696|GO:0009987_0.644|GO:0005622_0.643|GO:0005737_0.641|GO:0003674_0.638|GO:0043226_0.634|GO:0043227_0.612|GO:0043229_0.597|GO:0043231_0.581|GO:0051179_0.559|GO:0006810_0.558|GO:0051234_0.558|GO:0055085_0.515
|
IPR013057+101-500+
|
— |
PF01490+101-500+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+102-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-102
|
1.000
|
103-528
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
58007.250
|
7.118
|
5.000
|
18.182
|
12.689
|
37.689
|
62.311
|
10.227
|
7.955
|
51.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
198.978
|
144.927
|
321.139
|
66.012
|
19.132
|
27.044
|
15.804
|
89.023
|
50.115
|
576.785
|
351.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
-1.271
|
-2.175
|
-1.813
|
— |
-0.767
|
1.615
|
-2.353
|
— | — | — | — | — |
No JSON data available for plots.