Hg_chrom6_TN10mRNA_12588
Organism: Heterodera glycines Gene Locus: chr6:7441164-7446777 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.152 | 0.754 | 0.95 | 0.746 | 1.201 | 0.924 | 0.644 | 1.351 | 0.881 | 1.217 | 1.502 | 1.166 | 1.652 | 0.762 | 1.655 | 0.695 | 0.62 | 0.874 | 0.416 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11856
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.870
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSK,RKKALKKLQLNLRDFRR,KRKAREANKLAEKRAKL,KKKFASGTARVFVSRKKAL,KKFASGTARVFVSRKKALK,RRAVTEFMHFVIEAKALRK,ARKHRRVYGKIKYGLKRKAREANKLAEKRAK
|
11-31
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.775
|
0.120
|
0.010
|
0.272
|
0.097
|
0.031
|
0.129
|
0.002
|
0.025
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010808
|
1.000
|
1.000
|
Hsc_gene_5487.t1
|
Hsc_gene_5487.t1
|
— |
A8X871.1 Pescadillo homolog [Caenorhabditis briggsae]
|
KAI1731791.1 pescadillo like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005730|GO:0042254
|
GO:0008150_0.942|GO:0009987_0.792|GO:0005575_0.725|GO:0110165_0.725|GO:0016020_0.655|GO:0005622_0.651|GO:0043226_0.618|GO:0043229_0.603|GO:0043227_0.552|GO:0043231_0.530
|
IPR001357+319-409_322-407+|IPR010613+1-550_3-476_5-261+|IPR036420+321-409_327-400+
|
— |
PF06732+5-261+Pescadillo_N-terminus|PF16589+322-407+BRCT_domain,_a_BRCA1_C-terminus_domain
|
G3DSA:3.40.50.10190:FF:000002+327-400+Pescadillo_homolog
|
PTHR12221+3-476+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-555
|
1.000
|
1-443
|
2ep8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
63367.210
|
10.153
|
38.500
|
33.153
|
11.892
|
48.649
|
51.351
|
20.721
|
12.432
|
44.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
3075.540
|
1622.991
|
2026.027
|
3527.755
|
3911.922
|
3011.059
|
2858.765
|
1370.550
|
5378.642
|
2548.107
|
3761.193
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.983
|
0.908
|
0.117
|
-0.362
|
— |
-1.241
|
1.204
|
— | — | — | — | — |
No JSON data available for plots.