Hg_chrom6_TN10mRNA_12590
Organism: Heterodera glycines Gene Locus: chr6:7450894-7452748 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.361 | 0.87 | 0.183 | 0.975 | 0.955 | 0.633 | 0.798 | 2.128 | 0.863 | 1.37 | 1.564 | 1.33 | 0.511 | 1.737 | 0.684 | 0.959 | 1.612 | 0.409 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11858
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
52-75
|
0.981
|
— | — | — | — |
0.000
|
— | — |
0.519
|
0.486
|
0.025
|
0.590
|
0.170
|
0.044
|
0.049
|
0.039
|
0.118
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010809
|
1.000
|
1.000
|
Hsc_gene_5486.t1
|
Hsc_gene_5486.t1
|
— |
Q95Y90.1 Large ribosomal subunit protein uL6 [Caenorhabditis elegans]
|
KAI1725295.1 ribosomal protein l6 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0019843
|
GO:0005575_0.847|GO:0110165_0.835|GO:0005622_0.798|GO:0043226_0.755|GO:0043229_0.755|GO:0005737_0.740|GO:0008150_0.592|GO:0003674_0.569|GO:0005829_0.568|GO:0043228_0.531|GO:0043232_0.531
|
IPR000702+1-185+|IPR002359+161-182+|IPR020040+12-85_97-176+|IPR036789+1-85_4-85_86-182_86-188+
|
— |
PF00347+12-85_97-176+Ribosomal_protein_L6
|
G3DSA:3.90.930.12:FF:000003+87-188+60S_ribosomal_protein_L9|G3DSA:3.90.930.12:FF:000005+6-86+60S_ribosomal_protein_L9
|
PTHR11655+1-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
9cai_CH
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
21515.140
|
10.773
|
14.500
|
29.787
|
8.511
|
50.000
|
50.000
|
19.149
|
10.638
|
45.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8310.202
|
2867.810
|
5355.246
|
9334.352
|
10395.617
|
8744.667
|
5901.605
|
3177.572
|
15161.456
|
7819.717
|
10966.177
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
1.566
|
0.910
|
0.123
|
-0.234
|
-0.556
|
-1.570
|
1.039
|
— | — | — | — | — |
No JSON data available for plots.