Hg_chrom6_TN10mRNA_12591
Organism: Heterodera glycines Gene Locus: chr6:7454746-7462177 Feature type: polypeptideProtein Sequence
Length: 931
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.449 | 0.924 | 0.508 | 0.185 | 0.501 | 3.718 | 0.959 | 1.719 | 0.477 | 0.552 | 0.277 | 3.222 | 0.776 | 1.756 | 0.57 | 0.967 | 1.004 | 0.993 | 0.496 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11859
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.673
|
0.105
|
0.006
|
0.623
|
0.136
|
0.107
|
0.102
|
0.009
|
0.139
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001370
|
3.000
|
2.000
|
Hsc_gene_5485.t1;Hsc_gene_5485.t2
|
— | — |
Q21955.3 Mediator of RNA polymerase II transcription subunit 15 [Caenorhabditis elegans]
|
KAI1725293.1 med15 subunit of mediator complex non-fungal domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006355
|
GO:0008150_0.970|GO:0009987_0.927|GO:0032502_0.871|GO:0048856_0.871|GO:0050789_0.760|GO:0065007_0.760|GO:0050794_0.747|GO:0003674_0.736|GO:0005488_0.729|GO:0032501_0.687|GO:0008152_0.677|GO:0019222_0.677|GO:0031323_0.677|GO:0044237_0.677|GO:0044238_0.673|GO:0080090_0.673|GO:0048518_0.672|GO:0007275_0.671|GO:0048522_0.671|GO:0005515_0.663|GO:0043170_0.659|GO:0060255_0.659|GO:0009058_0.643|GO:0009889_0.643|GO:0009893_0.639|GO:0009059_0.637|GO:0010467_0.637|GO:0010468_0.637|GO:0010556_0.637|GO:0031326_0.637|GO:0044249_0.637|GO:0006139_0.630|GO:0016070_0.630|GO:0019219_0.630|GO:0051252_0.630|GO:0090304_0.630|GO:0010604_0.629|GO:0031325_0.626|GO:0009891_0.618|GO:0006351_0.617|GO:0006355_0.617|GO:0032774_0.617|GO:0034654_0.617|GO:0051179_0.617|GO:0141187_0.617|GO:2001141_0.617|GO:0031328_0.609|GO:0045935_0.602|GO:0051254_0.602|GO:0010557_0.601|GO:1902680_0.582|GO:0045893_0.581|GO:0050793_0.581|GO:0140110_0.567|GO:0051239_0.565|GO:0040007_0.557|GO:0009790_0.551|GO:0048589_0.544|GO:0033036_0.536|GO:0009791_0.532|GO:0009792_0.529|GO:0040008_0.529|GO:0048638_0.523|GO:0060090_0.521|GO:0040011_0.519|GO:0030674_0.516|GO:0044281_0.515|GO:0002164_0.514|GO:0062012_0.514|GO:0006629_0.511|GO:0008134_0.511|GO:0140297_0.511|GO:0003712_0.510|GO:0006082_0.510|GO:0019216_0.510|GO:0019752_0.510|GO:0043436_0.510|GO:0051235_0.510|GO:0032787_0.509|GO:0035264_0.509|GO:0061629_0.508|GO:0002119_0.506|GO:0003713_0.506|GO:0006631_0.506|GO:0008340_0.506|GO:0010565_0.506|GO:0010876_0.506|GO:0019217_0.506|GO:0019915_0.506|GO:0030730_0.506|GO:0040014_0.506|GO:0042180_0.506|GO:0044255_0.506
|
IPR019087+26-97+|IPR036529+23-100+|IPR048386+808-911+
|
— |
PF09606+26-97+ARC105/Med15_mediator_subunit_N-terminal_KIX_domain|PF21539+808-911+ARC105/Med15_mediator_subunit_C-terminal_domain
|
G3DSA:1.10.246.20:FF:000006+24-102+Mediator_of_RNA_polymerase_II_transcription_subunit_15
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-370;472-789
|
2.000
|
371-471;790-931
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
99967.730
|
6.771
|
5.000
|
13.856
|
9.774
|
45.220
|
54.780
|
8.056
|
5.800
|
56.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1724.280
|
2405.472
|
1920.660
|
1314.756
|
1196.505
|
1445.190
|
1662.569
|
2009.881
|
741.934
|
2504.136
|
1748.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
-1.009
|
-0.439
|
-0.168
|
0.287
|
0.212
|
0.371
|
— | — | — | — | — | — |
No JSON data available for plots.