Hg_chrom6_TN10mRNA_12592
Organism: Heterodera glycines Gene Locus: chr6:7454746-7462177 Feature type: polypeptideProtein Sequence
Length: 941
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.446 | 0.939 | 0.502 | 0.183 | 0.496 | 3.76 | 0.949 | 1.7 | 0.472 | 0.546 | 0.274 | 3.188 | 0.768 | 1.737 | 0.586 | 0.972 | 0.993 | 0.998 | 0.49 | 0.906 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11859
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.672
|
0.106
|
0.006
|
0.623
|
0.135
|
0.107
|
0.102
|
0.010
|
0.139
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001370
|
3.000
|
2.000
|
Hsc_gene_5485.t1;Hsc_gene_5485.t2
|
— | — |
Q21955.3 Mediator of RNA polymerase II transcription subunit 15 [Caenorhabditis elegans]
|
KAI1725293.1 med15 subunit of mediator complex non-fungal domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006355
|
GO:0008150_0.969|GO:0009987_0.926|GO:0032502_0.867|GO:0048856_0.867|GO:0050789_0.759|GO:0065007_0.759|GO:0050794_0.745|GO:0003674_0.734|GO:0005488_0.727|GO:0032501_0.685|GO:0008152_0.675|GO:0019222_0.675|GO:0031323_0.675|GO:0044237_0.675|GO:0044238_0.670|GO:0080090_0.670|GO:0048518_0.669|GO:0048522_0.669|GO:0007275_0.668|GO:0005515_0.662|GO:0043170_0.656|GO:0060255_0.656|GO:0009058_0.643|GO:0009889_0.643|GO:0009893_0.637|GO:0009059_0.634|GO:0010467_0.634|GO:0010468_0.634|GO:0010556_0.634|GO:0031326_0.634|GO:0044249_0.634|GO:0006139_0.628|GO:0016070_0.628|GO:0019219_0.628|GO:0051252_0.628|GO:0090304_0.628|GO:0010604_0.627|GO:0031325_0.622|GO:0051179_0.617|GO:0009891_0.616|GO:0006351_0.612|GO:0006355_0.612|GO:0032774_0.612|GO:0034654_0.612|GO:0141187_0.612|GO:2001141_0.612|GO:0031328_0.608|GO:0045935_0.600|GO:0051254_0.600|GO:0010557_0.599|GO:0045893_0.579|GO:1902680_0.579|GO:0050793_0.578|GO:0051239_0.564|GO:0140110_0.564|GO:0040007_0.556|GO:0009790_0.549|GO:0048589_0.544|GO:0033036_0.536|GO:0009791_0.532|GO:0009792_0.529|GO:0040008_0.529|GO:0048638_0.522|GO:0060090_0.521|GO:0040011_0.518|GO:0030674_0.516|GO:0044281_0.515|GO:0002164_0.514|GO:0062012_0.514|GO:0006629_0.511|GO:0003712_0.510|GO:0006082_0.510|GO:0008134_0.510|GO:0019216_0.510|GO:0019752_0.510|GO:0043436_0.510|GO:0051235_0.510|GO:0140297_0.510|GO:0032787_0.509|GO:0061629_0.507|GO:0002119_0.506|GO:0006631_0.506|GO:0008340_0.506|GO:0010565_0.506|GO:0010876_0.506|GO:0019217_0.506|GO:0019915_0.506|GO:0030730_0.506|GO:0035264_0.506|GO:0040014_0.506|GO:0042180_0.506|GO:0044255_0.506|GO:0003713_0.505
|
IPR019087+26-97+|IPR036529+23-100+|IPR048386+818-921+
|
— |
PF09606+26-97+ARC105/Med15_mediator_subunit_N-terminal_KIX_domain|PF21539+818-921+ARC105/Med15_mediator_subunit_C-terminal_domain
|
G3DSA:1.10.246.20:FF:000006+24-102+Mediator_of_RNA_polymerase_II_transcription_subunit_15
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-370;472-799
|
2.000
|
371-471;800-941
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
101206.060
|
6.829
|
6.000
|
13.815
|
9.883
|
45.377
|
54.623
|
8.077
|
5.739
|
56.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1724.280
|
2405.472
|
1920.660
|
1314.756
|
1196.505
|
1445.190
|
1662.569
|
2009.881
|
741.934
|
2504.136
|
1748.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
-1.009
|
-0.439
|
-0.168
|
0.287
|
0.212
|
0.371
|
— | — | — | — | — | — |
No JSON data available for plots.