SCN Proteipedia

Hg_chrom6_TN10mRNA_12593

Organism: Heterodera glycines Gene Locus: chr6:7462677-7471392 Feature type: polypeptide

Protein Sequence

Length: 711

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.769	0.687	1.1	0.242	1.805	1.262	0.67	0.633	1.25	0.988	1.343	1.986	0.781	0.811	2.21	0.723	0.623	0.895	0.649	0.703	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11860	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRSEAEKEQEKSRQR,KREPLSLEEILAKKKEI,KKRREEVEQKQKVAKDLEEQRKRFVAEARRAERGERERYRERERDRRSDRGDRRERERSPRSRSHSRERDERRSDRVQEKDSLKMQEAIKARYLGAPREKRKRGRRLHER	—	—	—	—	—	—	0.000	—	—	0.858	0.073	0.004	0.256	0.042	0.032	0.046	0.003	0.066	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010810	1.000	1.000	Hsc_gene_5484.t1	Hsc_gene_5484.t1;Hsc_gene_5484.t2	—	Q9BUQ8.3 Probable ATP-dependent RNA helicase DDX23 [Homo sapiens]	KAH7729265.1 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.856\|GO:0110165_0.856\|GO:0005622_0.808\|GO:0016020_0.778\|GO:0043226_0.760\|GO:0043229_0.748\|GO:0008150_0.740\|GO:0009987_0.682\|GO:0003674_0.678\|GO:0043227_0.678\|GO:0043231_0.651\|GO:0008152_0.563\|GO:0009058_0.563\|GO:0043170_0.563\|GO:0005488_0.559\|GO:0044238_0.558\|GO:0005634_0.555\|GO:0044237_0.553\|GO:0044249_0.550\|GO:0009059_0.548\|GO:0010467_0.542\|GO:0006139_0.539\|GO:0090304_0.520\|GO:0034654_0.518\|GO:0141187_0.510\|GO:0016070_0.506	IPR000629+436-444+\|IPR001650+526-689_540-649_568-649+\|IPR011545+296-503+\|IPR014001+291-530_303-515+\|IPR014014+272-300+\|IPR027417+233-519_357-670_521-710+	SM00487+291-530+\|SM00490+568-649+	PF00270+296-503+DEAD/DEAH_box_helicase\|PF00271+540-649+Helicase_conserved_C-terminal_domain	G3DSA:3.40.50.300:FF:000322+233-519+probable_ATP-dependent_RNA_helicase_DDX23\|G3DSA:3.40.50.300:FF:000520+520-710+probable_ATP-dependent_RNA_helicase_DDX23	PTHR47958+257-676+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-242	1.000	243-711	4nho_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.728	82599.440	9.915	24.500	37.834	7.314	54.571	45.429	20.956	16.878	40.928

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	4483.104	6045.112	3082.734	2704.569	2809.782	2907.712	2765.186	2856.362	13777.312	591.299	6242.447

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.200	-1.298	—	—	—	—	—	—	4.470	—	2.628	—	—

No JSON data available for plots.

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